Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00920
         (611 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7377| Best HMM Match : ELO (HMM E-Value=3.6e-06)                    36   0.026
SB_14072| Best HMM Match : ELO (HMM E-Value=5.7)                       34   0.079
SB_3799| Best HMM Match : No HMM Matches (HMM E-Value=.)               34   0.10 
SB_5145| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.0  
SB_37016| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  

>SB_7377| Best HMM Match : ELO (HMM E-Value=3.6e-06)
          Length = 255

 Score = 35.9 bits (79), Expect = 0.026
 Identities = 13/18 (72%), Positives = 17/18 (94%)
 Frame = +2

Query: 449 FVLRKKYSQITFLHLYHH 502
           F+LRKK +QI+FLH+YHH
Sbjct: 88  FILRKKNNQISFLHVYHH 105


>SB_14072| Best HMM Match : ELO (HMM E-Value=5.7)
          Length = 226

 Score = 34.3 bits (75), Expect = 0.079
 Identities = 16/30 (53%), Positives = 20/30 (66%)
 Frame = +2

Query: 404 LYLTAKFSELLDTVCFVLRKKYSQITFLHL 493
           +Y   K  ELLDTV  +LR +  QI+FLHL
Sbjct: 154 VYWATKNIELLDTVFMILRHRQRQISFLHL 183


>SB_3799| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 291

 Score = 33.9 bits (74), Expect = 0.10
 Identities = 26/84 (30%), Positives = 42/84 (50%)
 Frame = +2

Query: 257 LLAYNAAQVAISGYLVARFFLDLRRMGLVPSKCYLNEENSRNQIIFGTYLYLTAKFSELL 436
           ++AYN     +S Y V   +  +  +   P   +    ++R Q     Y +LT K  EL+
Sbjct: 62  MIAYNLLCAILSAYSV--LYAGVALVEGWPHSLFDLTLDTRAQHALHVY-WLTKKI-ELM 117

Query: 437 DTVCFVLRKKYSQITFLHLYHHTV 508
           DTV  +LR K  Q++FLH+   T+
Sbjct: 118 DTVFMILRPKTRQMSFLHVGFQTL 141


>SB_5145| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 556

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 18/56 (32%), Positives = 29/56 (51%)
 Frame = +1

Query: 370 KFKKSDHIRNISVSNSQIL*ATGHGLLRFAKEV*PDHVLAFVSSHRVVIATWAMLK 537
           K  + DH  N SVS ++     G+  L     V PD+++  ++S RV  AT  +L+
Sbjct: 116 KAGEDDHYSNRSVSENRREVKLGYNALSRMLSVEPDNIVIDLTSERVTSATEELLE 171


>SB_37016| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 176

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +3

Query: 15  LTTVVRASIAYRHNSIMDGTMFGTKSNYWDLNKSKFAVIDQLPL 146
           LT ++   +     S M    FGT   Y+DLN +K  +   L +
Sbjct: 93  LTLILDLQLIQIRGSYMSDFWFGTSVGYYDLNLNKVRITKHLAI 136


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,104,078
Number of Sequences: 59808
Number of extensions: 378614
Number of successful extensions: 767
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)