Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00920
(611 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68749-3|CAA92958.1| 288|Caenorhabditis elegans Hypothetical pr... 47 9e-06
AF244356-1|AAF70462.1| 288|Caenorhabditis elegans long chain po... 47 9e-06
Z19154-3|CAA79555.1| 291|Caenorhabditis elegans Hypothetical pr... 46 2e-05
AL132949-2|CAB61069.1| 286|Caenorhabditis elegans Hypothetical ... 40 0.001
Z81058-5|CAB02921.1| 274|Caenorhabditis elegans Hypothetical pr... 40 0.002
U61954-9|AAK29808.1| 286|Caenorhabditis elegans Fatty acid elon... 40 0.002
U41011-5|AAA82288.2| 320|Caenorhabditis elegans Fatty acid elon... 40 0.002
U61954-12|AAK29807.1| 274|Caenorhabditis elegans Fatty acid elo... 37 0.013
Z68749-1|CAA92960.2| 309|Caenorhabditis elegans Hypothetical pr... 34 0.070
Z98851-2|CAB11536.1| 324|Caenorhabditis elegans Hypothetical pr... 28 4.6
Z81072-5|CAB03020.1| 591|Caenorhabditis elegans Hypothetical pr... 27 8.0
U61948-6|AAB03142.1| 497|Caenorhabditis elegans Hypothetical pr... 27 8.0
U12964-4|AAA91219.3| 447|Caenorhabditis elegans Temporarily ass... 27 8.0
>Z68749-3|CAA92958.1| 288|Caenorhabditis elegans Hypothetical
protein F56H11.4 protein.
Length = 288
Score = 47.2 bits (107), Expect = 9e-06
Identities = 30/91 (32%), Positives = 51/91 (56%), Gaps = 4/91 (4%)
Frame = +2
Query: 242 QINIPLLAYN--AAQVAISGY--LVARFFLDLRRMGLVPSKCYLNEENSRNQIIFGTYLY 409
Q+ IPL +N A +I+G + FF + G+V S C + + ++ + + +L+
Sbjct: 72 QLTIPLNIWNFILAAFSIAGAVKMTPEFFGTIANKGIVASYCKVFDF-TKGENGYWVWLF 130
Query: 410 LTAKFSELLDTVCFVLRKKYSQITFLHLYHH 502
+ +K EL+DT+ VLRK+ + FLH YHH
Sbjct: 131 MASKLFELVDTIFLVLRKR--PLMFLHWYHH 159
>AF244356-1|AAF70462.1| 288|Caenorhabditis elegans long chain
polyunsaturated fattyacid elongation enzyme protein.
Length = 288
Score = 47.2 bits (107), Expect = 9e-06
Identities = 30/91 (32%), Positives = 51/91 (56%), Gaps = 4/91 (4%)
Frame = +2
Query: 242 QINIPLLAYN--AAQVAISGY--LVARFFLDLRRMGLVPSKCYLNEENSRNQIIFGTYLY 409
Q+ IPL +N A +I+G + FF + G+V S C + + ++ + + +L+
Sbjct: 72 QLTIPLNIWNFILAAFSIAGAVKMTPEFFGTIANKGIVASYCKVFDF-TKGENGYWVWLF 130
Query: 410 LTAKFSELLDTVCFVLRKKYSQITFLHLYHH 502
+ +K EL+DT+ VLRK+ + FLH YHH
Sbjct: 131 MASKLFELVDTIFLVLRKR--PLMFLHWYHH 159
>Z19154-3|CAA79555.1| 291|Caenorhabditis elegans Hypothetical
protein C40H1.4 protein.
Length = 291
Score = 46.4 bits (105), Expect = 2e-05
Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 4/101 (3%)
Frame = +2
Query: 224 EKARSVQINIPLLAYNAAQVAISGYLVARFFLD-LRRM---GLVPSKCYLNEENSRNQII 391
E + + PL+ +N A A S RF +D LR + G + CY N +
Sbjct: 74 ENRKPFTLKYPLILWNGALAAFSIIATLRFSIDPLRSLYAEGFYKTLCY--SCNPTDVAA 131
Query: 392 FGTYLYLTAKFSELLDTVCFVLRKKYSQITFLHLYHHTVWL 514
F ++ + +K EL DT+ +LRK+ + FLH YHH L
Sbjct: 132 FWSFAFALSKIVELGDTMFIILRKR--PLIFLHYYHHAAVL 170
>AL132949-2|CAB61069.1| 286|Caenorhabditis elegans Hypothetical
protein Y53F4B.2 protein.
Length = 286
Score = 39.9 bits (89), Expect = 0.001
Identities = 32/90 (35%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Frame = +2
Query: 257 LLAYNAAQVAISGYLVARF---FLD-LRRMGLVPSKCYLNEENSRNQIIFGTYLYLTAKF 424
LLA+N S RF F D + R G + S C N R+ F ++ +K
Sbjct: 82 LLAWNGFLAVFSIMGTWRFGIEFYDAVFRRGFIDSICLA--VNPRSPSAFWACMFALSKI 139
Query: 425 SELLDTVCFVLRKKYSQITFLHLYHHTVWL 514
+E DT+ VLRK+ + FLH YHH V L
Sbjct: 140 AEFGDTMFLVLRKR--PVIFLHWYHHAVVL 167
>Z81058-5|CAB02921.1| 274|Caenorhabditis elegans Hypothetical
protein F11E6.5 protein.
Length = 274
Score = 39.5 bits (88), Expect = 0.002
Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 2/113 (1%)
Frame = +2
Query: 176 LGYLFNFRY*NRPGVYEKARSVQINIPLLAYNAAQVA-ISGY-LVARFFLDLRRMGLVPS 349
+GYL + + + K +Q + L + + + I+ Y L+ F + G V S
Sbjct: 41 IGYLVTIYFGQKLMAHRKPFDLQNTLALWNFGFSLFSGIAAYKLIPELFGVFMKDGFVAS 100
Query: 350 KCYLNEENSRNQIIFGTYLYLTAKFSELLDTVCFVLRKKYSQITFLHLYHHTV 508
C + F + ++ +K EL DT+ VLRKK + F+H YHH +
Sbjct: 101 YCQNENYYTDASTGFWGWAFVMSKAPELGDTMFLVLRKK--PVIFMHWYHHAL 151
>U61954-9|AAK29808.1| 286|Caenorhabditis elegans Fatty acid
elongation protein 5 protein.
Length = 286
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/62 (32%), Positives = 37/62 (59%)
Frame = +2
Query: 323 LRRMGLVPSKCYLNEENSRNQIIFGTYLYLTAKFSELLDTVCFVLRKKYSQITFLHLYHH 502
+R+ G + +++E + + + +L++ +K ELLDTV VLRK+ + F+H YHH
Sbjct: 94 IRKDGFSHTYSHVSELYTDSTSGYWIFLWVISKIPELLDTVFIVLRKR--PLIFMHWYHH 151
Query: 503 TV 508
+
Sbjct: 152 AL 153
>U41011-5|AAA82288.2| 320|Caenorhabditis elegans Fatty acid
elongation protein 3 protein.
Length = 320
Score = 39.5 bits (88), Expect = 0.002
Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 4/99 (4%)
Frame = +2
Query: 218 VYEKARSVQINIPLLAYNA--AQVAISGYL--VARFFLDLRRMGLVPSKCYLNEENSRNQ 385
+ EK + Q++ PL +N+ A +I G+L F G + ++
Sbjct: 58 IMEKYKPFQLDTPLFVWNSFLAIFSILGFLRMTPEFVWSWSAEGNSFKYSICHSSYAQGV 117
Query: 386 IIFGTYLYLTAKFSELLDTVCFVLRKKYSQITFLHLYHH 502
F T + +K EL+DT+ VLRK+ + FLH YHH
Sbjct: 118 TGFWTEQFAMSKLFELIDTIFIVLRKR--PLIFLHWYHH 154
>U61954-12|AAK29807.1| 274|Caenorhabditis elegans Fatty acid
elongation protein 6 protein.
Length = 274
Score = 36.7 bits (81), Expect = 0.013
Identities = 16/40 (40%), Positives = 27/40 (67%)
Frame = +2
Query: 398 TYLYLTAKFSELLDTVCFVLRKKYSQITFLHLYHHTVWLS 517
T+L++ +K +E DT+ +LRKK + FLH YHH + ++
Sbjct: 113 TWLFVLSKVAEFGDTLFIILRKK--PLMFLHWYHHVLTMN 150
>Z68749-1|CAA92960.2| 309|Caenorhabditis elegans Hypothetical
protein F56H11.3 protein.
Length = 309
Score = 34.3 bits (75), Expect = 0.070
Identities = 18/44 (40%), Positives = 25/44 (56%)
Frame = +2
Query: 371 NSRNQIIFGTYLYLTAKFSELLDTVCFVLRKKYSQITFLHLYHH 502
N +Q + +L + +K E +DT VLRKK + FLH YHH
Sbjct: 140 NLPSQAEYWLFLTILSKAVEFVDTFFLVLRKK--PLIFLHWYHH 181
>Z98851-2|CAB11536.1| 324|Caenorhabditis elegans Hypothetical
protein H12I19.2 protein.
Length = 324
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -3
Query: 471 LYFFRKTKQTVSSSSENLAVRYRYV 397
LYFF KTK+TV S+ L + +Y+
Sbjct: 132 LYFFPKTKETVLSAQNILQRKVKYI 156
>Z81072-5|CAB03020.1| 591|Caenorhabditis elegans Hypothetical
protein F30A10.6 protein.
Length = 591
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = -3
Query: 309 LATKYPDIATCAALYANSGMLICTLLAFSYTPGLF 205
L+T +A AAL+A S ++C L+A ++T +F
Sbjct: 529 LSTDQNGLALIAALFAMSMTILCLLVADNFTATIF 563
>U61948-6|AAB03142.1| 497|Caenorhabditis elegans Hypothetical
protein C46A5.1 protein.
Length = 497
Score = 27.5 bits (58), Expect = 8.0
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +3
Query: 90 SNYWDLNKSKFAVIDQLPLMGSVS 161
+N+ DLN SK A++ QLPL + S
Sbjct: 270 ANWVDLNSSKKAILTQLPLSHTAS 293
>U12964-4|AAA91219.3| 447|Caenorhabditis elegans Temporarily
assigned gene nameprotein 340 protein.
Length = 447
Score = 27.5 bits (58), Expect = 8.0
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +2
Query: 260 LAYNAAQVAISGYLVARFFLDLRRMGL 340
L Y+ + A+ GY+ +R FLDLR++ L
Sbjct: 328 LYYSVSAPAMRGYISSRDFLDLRKIKL 354
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,238,262
Number of Sequences: 27780
Number of extensions: 294569
Number of successful extensions: 582
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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