Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00920
         (611 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding prote...    23   1.8  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    23   2.4  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   4.1  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   7.2  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   7.2  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   7.2  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   7.2  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    21   7.2  

>AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 478 DLAILLSQNEANRVQ*LREFGC 413
           DL+ L S  EAN  + +++FGC
Sbjct: 33  DLSDLKSMYEANSEEQMKKFGC 54


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 7/18 (38%), Positives = 15/18 (83%)
 Frame = +1

Query: 556 LIYIGFINSLVHGFMYSY 609
           L ++G+INS ++ F+Y++
Sbjct: 344 LTWLGWINSAINPFIYAF 361


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = +2

Query: 314 FLDLRRMGLVPSKCYLNEENSRNQIIFGTYLYLTAKFSELLDT 442
           + ++ +   VP+   L  E   N+I+   +L    K S L+ T
Sbjct: 396 YREMEKRQSVPANDLLTTEKDNNEIVTAQFLNQLKKSSVLVHT 438


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +2

Query: 419 KFSELLDTVCFVLRKKYSQITFLHL 493
           K+S ++  VCFV       I +LH+
Sbjct: 406 KYSRIVFPVCFVCFNLMYWIIYLHI 430


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +2

Query: 419 KFSELLDTVCFVLRKKYSQITFLHL 493
           K+S ++  VCFV       I +LH+
Sbjct: 406 KYSRIVFPVCFVCFNLMYWIIYLHI 430


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -1

Query: 362 LNNIYSEPNP 333
           LNN+YS P P
Sbjct: 405 LNNVYSTPGP 414


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -1

Query: 209 YFNTEN*INSQDREN 165
           Y+NT+N +N  DR++
Sbjct: 104 YWNTKNCVNPYDRDS 118


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +1

Query: 28  CVLL*LTDIIPSWTALCSEQNRIIGI 105
           C L  LTD + S  A C    ++I I
Sbjct: 166 CALTTLTDCLRSELAQCESNIKVISI 191


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,608
Number of Sequences: 438
Number of extensions: 3801
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)