Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00920
         (611 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g06460.1 68416.m00748 GNS1/SUR4 membrane family protein simil...    41   6e-04
At3g06470.1 68416.m00749 GNS1/SUR4 membrane family protein simil...    38   0.005
At5g01980.1 68418.m00117 zinc finger (C3HC4-type RING finger) fa...    29   3.2  
At3g29800.1 68416.m03792 AAA-type ATPase family contains Pfam pr...    27   7.4  

>At3g06460.1 68416.m00748 GNS1/SUR4 membrane family protein similar
           to SP|P25358 Elongation of fatty acids protein 2 (GNS1
           protein) (V-SNARE bypass mutant gene 2 protein)
           {Saccharomyces cerevisiae}; contains Pfam profile
           PF01151: GNS1/SUR4 family
          Length = 298

 Score = 41.1 bits (92), Expect = 6e-04
 Identities = 15/55 (27%), Positives = 30/55 (54%)
 Frame = +2

Query: 338 LVPSKCYLNEENSRNQIIFGTYLYLTAKFSELLDTVCFVLRKKYSQITFLHLYHH 502
           L  + C+  +   +  + F   ++  +K  E +DT+  +L K   +++FLH+YHH
Sbjct: 101 LFDAVCFPLDVKPKGPLFFWAQVFYLSKILEFVDTLLIILNKSIQRLSFLHVYHH 155


>At3g06470.1 68416.m00749 GNS1/SUR4 membrane family protein similar
           to SP|P39540 Elongation of fatty acids protein 1
           {Saccharomyces cerevisiae}; contains Pfam profile
           PF01151: GNS1/SUR4 family
          Length = 278

 Score = 37.9 bits (84), Expect = 0.005
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +2

Query: 353 CYLNEENSRNQIIFGTYLYLTAKFSELLDTVCFVLRKKYSQITFLHLYHH 502
           C+  +      + F   ++  +K  E  DT+  +L K   +++FLH+YHH
Sbjct: 109 CFPVDVKPNGPLFFWAQVFYLSKILEFGDTILIILGKSIQRLSFLHVYHH 158


>At5g01980.1 68418.m00117 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 493

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = +2

Query: 449 FVLRKKYSQITFLHLYH-HTV--WLSRHGQC 532
           F LR + +Q+  LHLYH H +  WLS    C
Sbjct: 357 FSLRNETTQLPCLHLYHAHCIVPWLSARNSC 387


>At3g29800.1 68416.m03792 AAA-type ATPase family contains Pfam
           profile: ATPase family PF00004
          Length = 440

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 11/44 (25%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +2

Query: 308 RFFLDLRRMGLVPSKCY-LNEENSRNQIIFGTYL-YLTAKFSEL 433
           R F+D   +G +P +C+ L  +     ++F +Y+ ++ +K  E+
Sbjct: 91  RIFVDKNNIGNIPKQCFELRFDEKHRDLVFDSYIPFVESKAKEI 134


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,319,588
Number of Sequences: 28952
Number of extensions: 269172
Number of successful extensions: 534
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)