Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00919
         (731 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0189 - 18911654-18913207,18913310-18913528,18914034-189143...    28   6.6  
12_01_1045 - 10739396-10739402,10739968-10740239,10740361-107409...    28   8.8  

>05_04_0189 -
           18911654-18913207,18913310-18913528,18914034-18914367,
           18914425-18914592,18914633-18914724,18914814-18914848,
           18915377-18915441,18915565-18915669,18916373-18916434,
           18916732-18916860,18918050-18918184,18918336-18918457,
           18918808-18918965,18919215-18919372,18919447-18919780,
           18919853-18919978,18920213-18920443,18920520-18920692
          Length = 1399

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 69  DRLDTVHLEGKMSANWIRITPGLTKGIH 152
           D  + V +E     NW+RI P LT  +H
Sbjct: 735 DPAEIVRVEEYKVGNWVRIRPSLTVAVH 762


>12_01_1045 -
           10739396-10739402,10739968-10740239,10740361-10740941,
           10741566-10742586
          Length = 626

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +1

Query: 505 HRKLNAELSSDYCKKTKIPKAYLSLTNHKDHTEIELTHSEL 627
           H  + A     +C     P+  L LTNH  HT ++L+   L
Sbjct: 486 HLAIQANHHRLFCALLGNPQVNLDLTNHSGHTPLDLSRRML 526


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,851,266
Number of Sequences: 37544
Number of extensions: 251641
Number of successful extensions: 685
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)