Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00919
         (731 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41007-12|AAA82272.1|  485|Caenorhabditis elegans Nucleoside tri...    32   0.48 
U23455-5|AAC46535.1|  305|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z70687-1|CAA94616.3|  403|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AF016424-1|AAB65331.2|  617|Caenorhabditis elegans Hypothetical ...    29   4.5  
U50301-10|AAV28351.1|  513|Caenorhabditis elegans Hypothetical p...    28   5.9  
AC024804-6|AAF60746.1|  162|Caenorhabditis elegans Hypothetical ...    28   7.8  

>U41007-12|AAA82272.1|  485|Caenorhabditis elegans Nucleoside
           triphosphatase protein 1 protein.
          Length = 485

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 7/58 (12%)
 Frame = -3

Query: 384 LFKSVLNVSGTKMNFNIFFNKY------FNVLIHI-TKLSSSTLNNFVSFFVLLVKIL 232
           LF+SVL ++G +M + +    Y      FN+L  +    S+  ++NF SFFV+L+ +L
Sbjct: 397 LFQSVLKIAGEEMQWALGAMLYHSKDLKFNLLEQLEVAQSTQQISNFFSFFVILIIVL 454


>U23455-5|AAC46535.1|  305|Caenorhabditis elegans Hypothetical
           protein F55E10.6 protein.
          Length = 305

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = -2

Query: 724 FYIYNLTNQSRLRFFYKLSNSFVSVQN**TWNITLNVSILFQYGLYDWL 578
           F I N+ N   ++ F KL     +V+N   W +  N  IL   G  DWL
Sbjct: 62  FGILNVANDESVKEFVKLVEK--TVENRGLWGVVANAGILGNSGPDDWL 108


>Z70687-1|CAA94616.3|  403|Caenorhabditis elegans Hypothetical
           protein T14C1.1 protein.
          Length = 403

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 25/99 (25%), Positives = 42/99 (42%)
 Frame = -3

Query: 549 FFAIIRTQLCI*FPVKFKSSCDIPEVSLLN*SSIGLVSEDHTLTITSAFSSHNPRLFKSV 370
           F  II   L I F V   S+ ++ +   L    +  +  +    + + F S+      S 
Sbjct: 261 FTLIILNTLIIGFSVFGSSASNMDDTMSLILVVLLFICCNTIALVINIFESYLSETLGSK 320

Query: 369 LNVSGTKMNFNIFFNKYFNVLIHITKLSSSTLNNFVSFF 253
           +N      NF + FN  FN++I+I K S    +   S+F
Sbjct: 321 INYIVDLSNFLVVFNSSFNIIIYI-KYSRPFADTLFSYF 358


>AF016424-1|AAB65331.2|  617|Caenorhabditis elegans Hypothetical
           protein F39G3.6 protein.
          Length = 617

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = -3

Query: 372 VLNVSGTKMNFNIFFNKYFNVLIHITKLSSSTLNNFVSFFVLLVK-ILHYYSFLV 211
           + N S +K NF  F    + +  ++TK   S +++F+SF+    K IL  Y  ++
Sbjct: 36  IRNYSKSKKNFRFFVISGYLMAKNLTKTKLSKVSDFISFYYRRFKRILPVYYLVI 90


>U50301-10|AAV28351.1|  513|Caenorhabditis elegans Hypothetical
           protein F20D6.12 protein.
          Length = 513

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = -3

Query: 429 HTLTITSAFSSHNPRLFKSVLNVSGTKMNF-NIFFNKYFNVLIHITKLSSS 280
           + LTI S+  +HN +L    +      +++  +FFN   N+L+ + +LS++
Sbjct: 376 YCLTIISSEFTHNTQLLPIFIFTCLVVLSYYGVFFNHLGNILLSVNRLSAT 426


>AC024804-6|AAF60746.1|  162|Caenorhabditis elegans Hypothetical
           protein Y51H7BR.3 protein.
          Length = 162

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 19/52 (36%), Positives = 27/52 (51%)
 Frame = -3

Query: 387 RLFKSVLNVSGTKMNFNIFFNKYFNVLIHITKLSSSTLNNFVSFFVLLVKIL 232
           RL +S  N   +K NF IFFN    + I +  L + TL  F+S    L+ +L
Sbjct: 51  RLLQSEENAKFSKKNFKIFFNSKKKLPI-LLLLLTITLFWFISSIFALIFVL 101


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,543,052
Number of Sequences: 27780
Number of extensions: 281147
Number of successful extensions: 762
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)