Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00918
         (732 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...    25   8.4  
SPAC57A10.08c |||esterase/lipase |Schizosaccharomyces pombe|chr ...    25   8.4  

>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 905

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = -2

Query: 479 VLCEVTRPCLVRSRRTRDVVGGAIDAVPCS--SNIFPSNN*QRTNLFFLVTKLTIGVKL 309
           VL     PC+   +RT D+  G  +A+  S   N    N+   + + FL + + +  K+
Sbjct: 446 VLANACGPCIGMWKRTDDIASGEPNAILTSFNRNFRSRNDGNPSTMNFLTSPVIVAAKI 504


>SPAC57A10.08c |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 364

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 12/88 (13%)
 Frame = +1

Query: 313 LTPIVNLVTKKNRFVLCQLFEGKILEEQGTASIAPPTT------------SRVLLERTRH 456
           + P+ + + K+  FV      G++ + Q   S  PPT             SR      R 
Sbjct: 89  IIPLNHNLAKQEVFVFLHGLGGQMSQFQKVMSYFPPTACLFSFDYWGCGLSRQAFPNQRI 148

Query: 457 GLVTSHKTIYNAFTKLRYRIIEKRFPKH 540
           G V    T     +KL Y+++EK FP++
Sbjct: 149 GSVDQLTT--KGLSKLTYKVLEKLFPEN 174


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,020,903
Number of Sequences: 5004
Number of extensions: 61488
Number of successful extensions: 185
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)