Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00918
         (732 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0170 - 26431937-26434282                                         30   1.6  
08_02_0923 - 22649420-22649605,22649694-22649774,22649867-226501...    30   2.2  
03_05_0744 + 27336697-27337131,27337329-27337787,27340852-273424...    29   2.9  
06_01_0800 - 5988425-5988580,5988842-5988951,5990275-5990392,599...    28   6.6  
05_03_0100 + 8391700-8392390,8392531-8392812,8393767-8394317           28   8.8  

>02_05_0170 - 26431937-26434282
          Length = 781

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 600 FD*FMFVYFASNKSSTFCFYCFALR 674
           FD F ++ ++  K   +CFYCF  R
Sbjct: 89  FDEFSWLEYSKEKDRAYCFYCFLFR 113


>08_02_0923 -
           22649420-22649605,22649694-22649774,22649867-22650146,
           22650412-22650716,22650809-22650961,22651425-22652261
          Length = 613

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 20/62 (32%), Positives = 29/62 (46%)
 Frame = -2

Query: 200 G*YRSVDRRSECCCSELV*YMRFILKMS*ARFRHLSIILRCMMATHHSPNEKLTICCENL 21
           G    + R  ECC   L  Y +++  M  AR   L+    CM++T     E+L    ENL
Sbjct: 240 GRMEDLPRLEECCLFGLN-YAKYLTGM--ARVTKLTFYCNCMLSTEVDVLERLPFLFENL 296

Query: 20  QS 15
           +S
Sbjct: 297 RS 298


>03_05_0744 +
           27336697-27337131,27337329-27337787,27340852-27342418,
           27342641-27343044
          Length = 954

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = -1

Query: 285 VRDAADSVEFAGLSPL*EYTTKGRSSTERVISLGRPTVR-MLLFGTCIIYALYLENVVS 112
           V D  D    AG S L  + +  +++ ERV    + ++R +LLFG CI    Y  N +S
Sbjct: 470 VNDRQDVHGIAGASKL-RHLSVSKTAIERVAIQKQVSLRTLLLFGRCITELTYFRNNIS 527


>06_01_0800 -
           5988425-5988580,5988842-5988951,5990275-5990392,
           5990649-5990723,5990856-5991030,5991160-5991425
          Length = 299

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +1

Query: 358 LCQLFEGKILEEQGTASIAPPTTSRVLLERTRHGLVTSHKTIYNA 492
           LC +F  +I       S A  TT+   LE+  HG+V +  TIYN+
Sbjct: 139 LCSVFASRISRAMHHISKAF-TTACSKLEKIGHGMVQNRYTIYNS 182


>05_03_0100 + 8391700-8392390,8392531-8392812,8393767-8394317
          Length = 507

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 98  LSIILRCMMATHHSPNEKLTICCENLQSSQD 6
           LSI+LR +M    +P E  T+ C  + +S D
Sbjct: 240 LSILLRLVMRLISAPGEAGTVLCHEISASND 270


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,992,315
Number of Sequences: 37544
Number of extensions: 371849
Number of successful extensions: 873
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)