Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00918
         (732 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15354| Best HMM Match : NHL (HMM E-Value=4.4e-14)                   30   2.2  
SB_32906| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_42227| Best HMM Match : SDA1 (HMM E-Value=0.66)                     29   5.1  
SB_16511| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_4109| Best HMM Match : 7tm_1 (HMM E-Value=8.89965e-42)              28   9.0  

>SB_15354| Best HMM Match : NHL (HMM E-Value=4.4e-14)
          Length = 1071

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 20/74 (27%), Positives = 30/74 (40%)
 Frame = -2

Query: 458 PCLVRSRRTRDVVGGAIDAVPCSSNIFPSNN*QRTNLFFLVTKLTIGVKLVEGCSLVKSE 279
           PC + S+++       ID  PCS N   S    +  +    T  ++  +   GC   K E
Sbjct: 598 PCSLNSQQSTGCDQDTIDHTPCSVNSEQSTGCDQDTIDH--TLCSVNSQQNTGCDQNKME 655

Query: 278 MRRTVLNLQDYRPC 237
             R  +N  DY  C
Sbjct: 656 HTRCSVNSPDYAGC 669


>SB_32906| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 770

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +3

Query: 609 FMFVYFASNKSSTFCFYC 662
           ++F+Y  ++KSST CF C
Sbjct: 22  YLFIYLVAHKSSTECFQC 39


>SB_42227| Best HMM Match : SDA1 (HMM E-Value=0.66)
          Length = 806

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +1

Query: 415 PPTTSRVLLERTRHGLVT-SHKTIYNAFTKLRYRIIEKRFPKHRIK 549
           PP    V LER  HG+ T + K IY  + K+   +    F KH ++
Sbjct: 137 PPPPPSVCLERNMHGVETATAKKIYKVWFKIIRNLTNYVFLKHVLR 182


>SB_16511| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 405

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 22/97 (22%), Positives = 48/97 (49%), Gaps = 3/97 (3%)
 Frame = +1

Query: 202 LGGRSSLCRIFLQGR---*SCKFNTVRRISDLTKLHPSTNLTPIVNLVTKKNRFVLCQLF 372
           LGG SSLCRI + G     + K   + R+++  ++    N+T  + +   +++ +L   +
Sbjct: 105 LGGTSSLCRISINGSNVGWTTKLEFLARVTERVEVESILNITGDLTM-NGESKSMLIASY 163

Query: 373 EGKILEEQGTASIAPPTTSRVLLERTRHGLVTSHKTI 483
           +   +     A I P +T+   +  T + ++TS + +
Sbjct: 164 KAYSVSNPSFAPIHPSSTN---IAETPYTMLTSGEVL 197


>SB_4109| Best HMM Match : 7tm_1 (HMM E-Value=8.89965e-42)
          Length = 331

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +1

Query: 406 SIAPPTTSRVLLERTRHGLVTSHKTIYNAFTKLRYRIIEKRFPK 537
           S+AP T+  +L  +  H L  S ++I N  T+ R R+  KR  K
Sbjct: 180 SLAPSTSMIILYSKVVHALWFSKQSIRNHRTEERDRLQRKRATK 223


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,532,161
Number of Sequences: 59808
Number of extensions: 452995
Number of successful extensions: 1028
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1027
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)