Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00918
         (732 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         26   1.0  
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    26   1.4  
AY391745-1|AAR28995.1|  460|Anopheles gambiae putative GPCR prot...    23   7.4  

>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 26.2 bits (55), Expect = 1.0
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -2

Query: 110  RFRHLSIILRCMMATHHSPNEKLTICCENLQ 18
            RFR  S +L+ M    +SPN +LT C + L+
Sbjct: 1992 RFRDRSYLLQAMTHASYSPN-RLTDCYQRLE 2021


>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +2

Query: 608 IHVCVFRK*QIEY-ILFLLFRVTFLRQIINVLDKCS 712
           IHVC+ RK  +EY  LFLL+  T   + + +  KC+
Sbjct: 221 IHVCMARKAWLEYEELFLLYSATL--KDLKLAKKCT 254


>AY391745-1|AAR28995.1|  460|Anopheles gambiae putative GPCR
           protein.
          Length = 460

 Score = 23.4 bits (48), Expect = 7.4
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = +1

Query: 64  WVAIIQRKIIDRCLNLAYDIFKIKRIYYTSSEQQHSDR 177
           W  + + K I  CL +   +  +  I+Y  +  Q+S+R
Sbjct: 149 WCTVRRAKTIIACLTMVGSVHSVPYIFYAGT--QYSER 184


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 766,858
Number of Sequences: 2352
Number of extensions: 15122
Number of successful extensions: 24
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 74844540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)