Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00918
         (732 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41991-1|AAA83341.2| 1400|Caenorhabditis elegans Rna polymerase,...    29   2.6  
AF003134-2|AAB54141.5|  691|Caenorhabditis elegans Hypothetical ...    29   4.5  
U49956-2|AAO38616.1|  136|Caenorhabditis elegans Dauer or aging ...    28   7.8  
AC006665-5|AAF39907.1|  630|Caenorhabditis elegans Hypothetical ...    28   7.8  

>U41991-1|AAA83341.2| 1400|Caenorhabditis elegans Rna polymerase,
            class iii (c) protein1 protein.
          Length = 1400

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
 Frame = -2

Query: 632  TCEIHKH-ESIKVSLVRNRCKFKTKEINYLILCFGK 528
            +C+I K+ E+ K SL+ N C  KT+  +++ LC+ K
Sbjct: 999  SCKICKNLEAYKTSLLANSCLTKTQLCSFIELCYYK 1034


>AF003134-2|AAB54141.5|  691|Caenorhabditis elegans Hypothetical
           protein ZC581.3 protein.
          Length = 691

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = -2

Query: 629 CEIHKHESIKVSLVRNRCKFKTKEINYLILCFGKRFSIIRYR 504
           C   +  +I    VRN+CKF   E+   + C  K  S +  R
Sbjct: 75  CPKSEKHAIFAKHVRNKCKFVLSEMEPTLKCISKHHSFLTMR 116


>U49956-2|AAO38616.1|  136|Caenorhabditis elegans Dauer or aging
          adult overexpressionprotein 2 protein.
          Length = 136

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 77 MMATHHSPNEKLTICCENLQSSQDE 3
          ++A   +PNEKL +CC  L+ +  E
Sbjct: 12 LLALAATPNEKLKLCCATLKDADKE 36


>AC006665-5|AAF39907.1|  630|Caenorhabditis elegans Hypothetical
           protein H27M09.1 protein.
          Length = 630

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +3

Query: 384 IGRTRHGINCSSDHIPSP 437
           I R R GI+C  DHIP P
Sbjct: 170 IQRKRLGISCEGDHIPPP 187


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,855,462
Number of Sequences: 27780
Number of extensions: 351878
Number of successful extensions: 968
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 968
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)