Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00918
         (732 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    25   0.97 
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    23   2.2  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   9.0  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 24.6 bits (51), Expect = 0.97
 Identities = 25/98 (25%), Positives = 38/98 (38%)
 Frame = -2

Query: 320 GVKLVEGCSLVKSEMRRTVLNLQDYRPCRNIRQREDLPPSG*YRSVDRRSECCCSELV*Y 141
           GV   EGC   K   RR++     YRPC   +Q   L  +       R  +C     V  
Sbjct: 80  GVHSCEGC---KGFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRLKKCIA---VGM 133

Query: 140 MRFILKMS*ARFRHLSIILRCMMATHHSPNEKLTICCE 27
            R  ++      R  + IL  M  + HS +++  +  E
Sbjct: 134 SRDAVRFGRVPKREKARILAAMQQSSHSRSQEKAVAAE 171


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +1

Query: 262 NTVRRISDLTKLHPSTNLTPIVNLVTKKNRFV 357
           N + ++  L  L P T+    + L+TK  RF+
Sbjct: 66  NCLEKLKVLVPLGPETSRHTTLGLLTKAKRFI 97


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +1

Query: 274 RISDLTKLHPSTNLTPIVNLVTK 342
           +I +  + + + NLTP VN++ K
Sbjct: 462 KIIEEKRKNKNKNLTPAVNIIVK 484


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,914
Number of Sequences: 438
Number of extensions: 4578
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)