Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00918
         (732 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g27740.1 68418.m03327 expressed protein                             30   1.4  
At5g62730.1 68418.m07875 proton-dependent oligopeptide transport...    28   5.6  
At4g05632.1 68417.m00875 hypothetical protein                          28   5.6  
At2g28630.1 68415.m03481 beta-ketoacyl-CoA synthase family protein     28   5.6  

>At5g27740.1 68418.m03327 expressed protein
          Length = 354

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 3/96 (3%)
 Frame = +1

Query: 115 YDIFKIKRIYYTSSEQQHSDRRSTERYHPLGGRSSLCRIFLQGR*SCKFNTV--RRISDL 288
           Y +  +  +   S E QHS RR+ E+Y      SS CR+ L    S K       R  ++
Sbjct: 131 YKVLVLNEVDKLSREAQHSLRRTMEKY------SSSCRLILCCNSSSKVTEAIKSRCLNV 184

Query: 289 TKLHPS-TNLTPIVNLVTKKNRFVLCQLFEGKILEE 393
               PS   +  ++  V KK    L Q F  +I E+
Sbjct: 185 RINAPSQEEIVKVLEFVAKKESLQLPQGFAARIAEK 220


>At5g62730.1 68418.m07875 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 589

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +1

Query: 616 LCISQVTNRVHFVFTVSRYVFKAN 687
           +C+    N +H++F  SRYV+++N
Sbjct: 564 MCVLSGINFLHYLFWASRYVYRSN 587


>At4g05632.1 68417.m00875 hypothetical protein
          Length = 197

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +1

Query: 415 PPTTSRVLLERTRHGLVTSHKTIYNAFTKLRYRIIE 522
           P  +  V L RT+ G    H  +Y   TKLR  ++E
Sbjct: 56  PLGSDLVSLSRTKQGSALEHHKLYMHLTKLRQSVLE 91


>At2g28630.1 68415.m03481 beta-ketoacyl-CoA synthase family protein
          Length = 476

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -2

Query: 86  LRCMMATHHSPNEKLTICCENLQSSQ 9
           L+CM+ THH   E+   CC   +  Q
Sbjct: 240 LKCMVRTHHGAREESYNCCIQAEDEQ 265


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,527,598
Number of Sequences: 28952
Number of extensions: 309031
Number of successful extensions: 707
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)