Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00917
         (697 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    31   0.009
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        22   4.2  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   5.5  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 31.1 bits (67), Expect = 0.009
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +1

Query: 604 CLNGGVCFTVVISESPIYNCECQSGYVGPRC 696
           C N G C   V      + C+C  G+VGPRC
Sbjct: 269 CHNNGTCLDKVGG----FECKCPPGFVGPRC 295



 Score = 30.7 bits (66), Expect = 0.012
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = +1

Query: 604 CLNGGVCFTVVISESPIYNCECQSGYVGPRC 696
           C NGGVC    IS+   Y C+C SG  G  C
Sbjct: 385 CQNGGVCR---ISDGGGYICDCPSGTNGTNC 412



 Score = 29.5 bits (63), Expect = 0.027
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +1

Query: 604 CLNGGVCFTVVISESPIYNCECQSGYVGPRC 696
           C NGGVC T+       + C C  G+ G  C
Sbjct: 347 CQNGGVCTTIHAG----HKCTCPEGFYGKNC 373



 Score = 27.5 bits (58), Expect = 0.11
 Identities = 12/31 (38%), Positives = 13/31 (41%)
 Frame = +1

Query: 604 CLNGGVCFTVVISESPIYNCECQSGYVGPRC 696
           CLNG  C       +  Y C C  GY G  C
Sbjct: 70  CLNGATCQ----DHTTHYTCHCPYGYTGKDC 96



 Score = 22.6 bits (46), Expect = 3.2
 Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
 Frame = +1

Query: 577 CEPEYSQYYCL-NGGVCFTVVISESPIYNCECQSGYVGPRC 696
           C  + +   CL +G  C   +   +PIY+  CQ  Y    C
Sbjct: 543 CNEDCNNPECLFDGRDCEESLQPCNPIYDAYCQKHYANGLC 583



 Score = 21.8 bits (44), Expect = 5.5
 Identities = 10/29 (34%), Positives = 12/29 (41%)
 Frame = +1

Query: 610 NGGVCFTVVISESPIYNCECQSGYVGPRC 696
           N G C  +  S    + C C  GY G  C
Sbjct: 157 NNGTCEDIGNS----HRCHCSDGYSGSYC 181


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +2

Query: 110 NLQSLKVCLTFHFRHARRGIDAISLAPVETAP 205
           +L ++++C        RRG   + L PV + P
Sbjct: 200 DLNAVRLCFQVFLEGERRGKFTVPLTPVVSEP 231



 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 230 CKKVNTGNSPGGSSTP 277
           C+  + G+ PG SSTP
Sbjct: 82  CEGRSAGSIPGASSTP 97


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = -2

Query: 333 RKAMT*PHSNFEQESFARI--GVDDPPGLFPVFTFLH 229
           R  MT P S F + S + +      PPG+FPV   +H
Sbjct: 163 RLMMTSP-SGFNRASVSPLISSSSSPPGVFPVDAPMH 198


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,671
Number of Sequences: 336
Number of extensions: 2914
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18322480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)