BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS00917 (697 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 32 0.068 SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces pom... 29 0.48 SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac... 27 2.6 SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 25 7.8 SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch... 25 7.8 SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ... 25 7.8 >SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosaccharomyces pombe|chr 1|||Manual Length = 990 Score = 32.3 bits (70), Expect = 0.068 Identities = 12/36 (33%), Positives = 21/36 (58%) Frame = -2 Query: 255 LFPVFTFLHRRSLAHDGGAVSTGARDIASIPRRACR 148 ++ F FLH R +A + G S +R++A+I + R Sbjct: 661 IYRAFVFLHNRDIAENNGVFSARSRNVATIAAKGAR 696 >SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 453 Score = 29.5 bits (63), Expect = 0.48 Identities = 13/31 (41%), Positives = 18/31 (58%) Frame = +1 Query: 49 FVYNFSNGTLSVCVLNDRHTQFTKFEGVFDF 141 F+ N G L+V N + +FT F+G FDF Sbjct: 2 FLQNLFLGFLAVVCANAQFAEFTAFDGKFDF 32 >SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosaccharomyces pombe|chr 2|||Manual Length = 1630 Score = 27.1 bits (57), Expect = 2.6 Identities = 13/20 (65%), Positives = 15/20 (75%) Frame = -3 Query: 68 FEKLYTKWSCERIESTLHSL 9 F+K +T CERIESTLH L Sbjct: 510 FKKKFTT-ICERIESTLHEL 528 >SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 1310 Score = 25.4 bits (53), Expect = 7.8 Identities = 13/31 (41%), Positives = 15/31 (48%) Frame = -2 Query: 642 RYHNGEADSTIKTVVLRVLGLALKRRESDVD 550 RYH EA R L +LK+R SD D Sbjct: 503 RYHRSEAHRRRTKRAFRRLAASLKKRPSDKD 533 >SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 658 Score = 25.4 bits (53), Expect = 7.8 Identities = 11/28 (39%), Positives = 20/28 (71%), Gaps = 2/28 (7%) Frame = +2 Query: 110 NLQSLKV--CLTFHFRHARRGIDAISLA 187 NL+SL V CL +HF ++ G+D+ +++ Sbjct: 216 NLKSLYVELCLVYHFHNSHLGMDSSTVS 243 >SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces pombe|chr 1|||Manual Length = 965 Score = 25.4 bits (53), Expect = 7.8 Identities = 12/42 (28%), Positives = 20/42 (47%) Frame = +3 Query: 243 TQETVRADRQRRCEQRIPVRNSNAVMSSPFGFLISHRPMSKS 368 +Q+ VR+ + V+NSN+ +S +I HR S Sbjct: 148 SQQAVRSAITETTNPSVSVQNSNSTSTSSAAMIIPHRDSQNS 189 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,438,621 Number of Sequences: 5004 Number of extensions: 44914 Number of successful extensions: 133 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 131 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 133 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 321151040 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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