Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00917
(697 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1104 + 26121288-26122200,26122324-26122506,26122841-26124009 32 0.38
11_06_0470 + 23977394-23977503,23977755-23977922,23978724-239793... 31 0.66
01_05_0553 + 23185473-23186188,23187096-23187101,23187230-231873... 29 2.7
07_03_0909 + 22512313-22512474,22513151-22513465,22513539-225166... 29 4.7
03_05_0092 - 20714102-20717902 29 4.7
08_02_0925 - 22668875-22668889,22668942-22669018,22669383-226695... 28 6.2
06_01_0308 + 2229025-2229260,2229448-2230145,2230377-2230469,223... 28 6.2
04_03_0184 + 12395349-12395542,12396821-12397467,12398119-123986... 28 6.2
03_06_0744 + 35910512-35910569,35911145-35911325,35912332-359124... 28 8.1
02_01_0424 - 3097245-3099377 28 8.1
>12_02_1104 + 26121288-26122200,26122324-26122506,26122841-26124009
Length = 754
Score = 32.3 bits (70), Expect = 0.38
Identities = 17/38 (44%), Positives = 20/38 (52%)
Frame = +1
Query: 574 KCEPEYSQYYCLNGGVCFTVVISESPIYNCECQSGYVG 687
K E E S Y C++ T VI+ SP Y C C GY G
Sbjct: 259 KGEKEPSSYACVSANSYCTAVIN-SPGYLCNCSQGYGG 295
>11_06_0470 +
23977394-23977503,23977755-23977922,23978724-23979367,
23979584-23979823,23980175-23980296,23980397-23981080
Length = 655
Score = 31.5 bits (68), Expect = 0.66
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Frame = -3
Query: 176 SHRSLDEHVES-----EKSNTPSNFVNCVWRSFKTQTLNVPFEKLYTKWSCERI 30
SH+S+D V+ K+N VNC+ RS + +VPF K + C I
Sbjct: 131 SHKSIDAAVKDTIRHLRKNNVELTKVNCILRSMRGSAESVPFTKNSVRTVCAEI 184
>01_05_0553 +
23185473-23186188,23187096-23187101,23187230-23187374,
23187887-23188159,23188275-23188338,23188479-23188744,
23188951-23189045,23189544-23189718,23190669-23191063,
23191830-23191953,23192864-23192959,23193049-23193120,
23194687-23194824,23195369-23195549,23195602-23195963,
23196944-23197386,23197461-23197763,23197857-23198081,
23198260-23198350,23198702-23198779,23198939-23199229,
23199316-23199513,23199681-23200163,23200488-23200562,
23201163-23201324,23201400-23201729,23201816-23201916,
23202477-23202581,23202931-23203162,23203913-23204257,
23204346-23204447,23206010-23206153,23206463-23206551,
23206979-23207061,23207172-23207287,23207824-23207909,
23208461-23208560,23209270-23209335
Length = 2451
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = -3
Query: 242 SLFYIDDHSLMTEARFLRAPEISHRSLDEHVESEKSNTPSNFV 114
SL ++DD ++E +SH D +VESE+ N ++FV
Sbjct: 589 SLLHMDDSIKLSEVAPSEC-SVSHECFDSNVESEEKNMVTSFV 630
>07_03_0909 +
22512313-22512474,22513151-22513465,22513539-22516633,
22516812-22516910,22517031-22517379
Length = 1339
Score = 28.7 bits (61), Expect = 4.7
Identities = 21/52 (40%), Positives = 27/52 (51%)
Frame = +1
Query: 7 LNECSVLSILSQLHFVYNFSNGTLSVCVLNDRHTQFTKFEGVFDFSLSTCSS 162
+NE S LS S+ H SNG+L V VL T + +FEG S+ C S
Sbjct: 389 VNEVSFLSYNSKNHIAAYLSNGSLCVSVLPVADT-WEEFEG-SGISVDPCFS 438
>03_05_0092 - 20714102-20717902
Length = 1266
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = -3
Query: 257 DCFLCSLFYIDDHSLMTEARFLRAPEISHRSLDEHVESEKSNTPSNFVNCVW 102
+CF+ ++DD+ + L+ H S D+ ES S P +++NC++
Sbjct: 1077 ECFITHGAWVDDYPFLFSVWTLKVTSCPHVSTDQ--ESSFSIEPLDWLNCLF 1126
>08_02_0925 -
22668875-22668889,22668942-22669018,22669383-22669500,
22669662-22669685,22670067-22670360,22670456-22670563,
22671098-22671946
Length = 494
Score = 28.3 bits (60), Expect = 6.2
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Frame = -3
Query: 236 FYIDDHSLMTEARFLRAPEISHRSLD--EHVESEKSNTPSNFVNCVWRSFKTQTLNVPFE 63
FY L T RAP + H ++ +H E++ +F+N +W + L+
Sbjct: 294 FYKASSILSTFGLLTRAPNLLHLEIEITDH-ENQSDEVDIDFLNALWTNSLFANLDFVSI 352
Query: 62 KLYTKWSCE 36
K T WS E
Sbjct: 353 KSATCWSNE 361
>06_01_0308 +
2229025-2229260,2229448-2230145,2230377-2230469,
2230815-2231992
Length = 734
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = +1
Query: 598 YYCL-NGGVCFTVVISESPIYNCECQSGYVG 687
Y C+ N C V+ E+P Y C C GY G
Sbjct: 274 YACVANNSKCIDVI--EAPGYRCNCTQGYEG 302
>04_03_0184 +
12395349-12395542,12396821-12397467,12398119-12398655,
12399087-12399239,12399315-12399809,12400032-12400555
Length = 849
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Frame = +1
Query: 592 SQYYCLNGGV-CFTVVISESPIYNCECQSGYVG 687
+ Y C + C + S Y CEC SGY+G
Sbjct: 236 TDYACASANSQCVDSISSTDLGYRCECNSGYIG 268
>03_06_0744 +
35910512-35910569,35911145-35911325,35912332-35912419,
35912541-35912726,35913591-35913725,35913803-35913862,
35914609-35914698,35915384-35915515,35916039-35916183,
35916266-35916439,35916629-35916692,35916778-35916847,
35917328-35917445,35918258-35918280,35918398-35918499,
35919831-35920250,35920327-35920563
Length = 760
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -2
Query: 237 FLHRRSLAHDGGAVSTGARDI 175
F H AHD GAVSTGA +
Sbjct: 39 FSHGADSAHDAGAVSTGASGV 59
>02_01_0424 - 3097245-3099377
Length = 710
Score = 27.9 bits (59), Expect = 8.1
Identities = 19/53 (35%), Positives = 22/53 (41%), Gaps = 5/53 (9%)
Frame = +1
Query: 19 SVLSILSQLHFVYNFSNGTLSVCV-----LNDRHTQFTKFEGVFDFSLSTCSS 162
S LS L LH YN GT+ V LN F KF G F ++ S
Sbjct: 339 SKLSSLKSLHVSYNSFAGTIPESVYTCSNLNALQLSFNKFHGQLSFRITNLKS 391
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,762,870
Number of Sequences: 37544
Number of extensions: 319600
Number of successful extensions: 921
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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