Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00916
(727 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces... 29 0.89
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su... 28 1.6
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ... 28 1.6
SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces p... 27 2.7
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce... 27 3.6
SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyce... 27 3.6
SPBC36.02c |||spermidine family transporter |Schizosaccharomyces... 27 3.6
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch... 26 4.8
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 26 4.8
SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyce... 26 6.3
SPAC869.10c |||proline specific permease |Schizosaccharomyces po... 25 8.3
>SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 557
Score = 28.7 bits (61), Expect = 0.89
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 545 ISPDGWVHGTSWLTGLNGYLPAVYTRRTAE-TDAWTLLKAVSLGN 676
++P+GW +W TG + Y+ + + + A LL AV++GN
Sbjct: 133 LAPEGWGPLAAWFTGWSNYIAQLVGGPSINYSTAAMLLGAVNIGN 177
>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
subunit |Schizosaccharomyces pombe|chr 1|||Manual
Length = 271
Score = 27.9 bits (59), Expect = 1.6
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 80 NVNAYFWGKWLICLHEKLPQLANQNKMFL 166
N+N YF +WL HEK+ Q +K+ L
Sbjct: 142 NINVYFDEEWLNGFHEKVIQKTYDHKLCL 170
>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 791
Score = 27.9 bits (59), Expect = 1.6
Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 5/58 (8%)
Frame = -2
Query: 702 DSDLQSEQLFPSETALSKVHASVSAVRR-----VYTAGRYPFKPVSHEVPWTHPSGEI 544
DS L E L+ S VH S+ VR Y KP +HE P HP ++
Sbjct: 212 DSGLDEEDLY------SGVHRSIDVVRNYTRSNAYNKNNKDQKPKNHEAPHQHPQQKV 263
>SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 411
Score = 27.1 bits (57), Expect = 2.7
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +1
Query: 553 RRMGPWYFMAHWLKRVSTCCVHATHR 630
R + P + A W V CC HAT R
Sbjct: 133 RLVVPKHIFARWSLLVGECCAHATAR 158
>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 576
Score = 26.6 bits (56), Expect = 3.6
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +3
Query: 300 DDPREYIFYASPTGPLLSQLLEFWDKSKSTC 392
+DP ++F P PL++ F K K TC
Sbjct: 108 EDPDRFVFSIDPKSPLIAVNWPFRKKLKITC 138
>SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 544
Score = 26.6 bits (56), Expect = 3.6
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 545 ISPDGWVHGTSWLTGLNGYLPAV 613
++P GW +WLTG + YL V
Sbjct: 114 LAPKGWGPFAAWLTGWSNYLVQV 136
>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 577
Score = 26.6 bits (56), Expect = 3.6
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +3
Query: 300 DDPREYIFYASPTGPLLSQLLEFWDKSKSTC 392
++P ++F P PL++ F K K+TC
Sbjct: 109 EEPERFVFSIDPKSPLIAVNWPFKRKLKTTC 139
>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 26.2 bits (55), Expect = 4.8
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 163 SPLQILLQMGFRRQRALKALAATGNRSVQLAL 258
S ++ L MGF R +AL ATGN + A+
Sbjct: 580 SAIEQLQAMGFPLVRCQRALLATGNSDTETAM 611
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 26.2 bits (55), Expect = 4.8
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +3
Query: 306 PREYIFYASPTGPLLSQLLE 365
P+ YI + +PT PL++Q +E
Sbjct: 115 PKSYIVFMAPTKPLVTQQME 134
>SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 25.8 bits (54), Expect = 6.3
Identities = 9/36 (25%), Positives = 20/36 (55%)
Frame = +2
Query: 548 SPDGWVHGTSWLTGLNGYLPAVYTRRTAETDAWTLL 655
+P GW SW+TG + Y+ + + + + A +++
Sbjct: 139 APKGWGPLASWITGWSNYIGNIIGQPSVNSSAASMI 174
>SPAC869.10c |||proline specific permease |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 552
Score = 25.4 bits (53), Expect = 8.3
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +3
Query: 315 YIFYASPTGPLLSQLLEFWDKSKSTCGWNGAHNFLPHITLVSFF 446
Y+F + S ++E+W + T GW FL + L SFF
Sbjct: 132 YVFLVASEVTAASIVIEYWTYAVPTAGWIAILLFLVAV-LNSFF 174
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,953,345
Number of Sequences: 5004
Number of extensions: 59743
Number of successful extensions: 179
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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