Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00916
         (727 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0076 - 17068516-17068838,17068897-17069198,17069282-170694...    31   0.93 
01_01_0543 + 3985771-3985866,3985965-3986145,3986668-3986780,398...    30   1.6  
07_03_1387 + 26202975-26203274,26203363-26203449,26203541-262036...    29   3.8  
01_01_0468 + 3454254-3454574,3454688-3454828,3454907-3455059           29   5.0  
07_02_0025 - 11939976-11940158,11941166-11941378,11943191-119433...    28   6.6  

>03_04_0076 -
           17068516-17068838,17068897-17069198,17069282-17069435,
           17069506-17069965,17070413-17070492,17070813-17070869,
           17071757-17071838
          Length = 485

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 18/56 (32%), Positives = 24/56 (42%)
 Frame = -2

Query: 720 LSVFEPDSDLQSEQLFPSETALSKVHASVSAVRRVYTAGRYPFKPVSHEVPWTHPS 553
           L V  PD ++QSE LF  + +        +  RR+Y  G     P     PW  PS
Sbjct: 394 LMVAGPDGNVQSELLFRKDRSTFTFDKGWAFPRRIYFNGESCVMPSPDLYPWLPPS 449


>01_01_0543 +
           3985771-3985866,3985965-3986145,3986668-3986780,
           3986854-3987190,3987602-3987603,3987661-3987743,
           3988017-3988116,3988330-3988463,3988711-3988788,
           3989333-3989387,3990159-3990239,3990369-3990567,
           3990609-3990699,3990770-3990892,3991440-3991528,
           3992450-3992539,3992619-3992792,3992911-3993035,
           3993246-3993372,3993826-3993998
          Length = 816

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = +1

Query: 112 NLPPRKVTSASKSKQDVSPLQILLQMGFRRQRALKALAATG 234
           N P  K + A++   D + +Q L+  GF+   A KALAA+G
Sbjct: 678 NDPISKDSQAAEQTVDETSVQTLVSFGFQEDVARKALAASG 718


>07_03_1387 +
           26202975-26203274,26203363-26203449,26203541-26203648,
           26203708-26203980,26205242-26205355,26205900-26206268
          Length = 416

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = +1

Query: 139 ASKSKQDVSPLQILLQMGFRRQRALKALAATGNRS 243
           A K KQDV    +     FRR++A  A AATG R+
Sbjct: 262 AEKMKQDVDVGIVADFQRFRREKAAAAAAATGKRT 296


>01_01_0468 + 3454254-3454574,3454688-3454828,3454907-3455059
          Length = 204

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -2

Query: 660 ALSKVHASVSAVRRVYTAGRYPFKPVSHEVPW 565
           AL+ V AS +AVR +   GR  ++PV H   W
Sbjct: 140 ALAVVMASTAAVRAMNGYGRGYYEPVGHSKSW 171


>07_02_0025 -
           11939976-11940158,11941166-11941378,11943191-11943323,
           11943522-11943741,11944083-11944182,11944526-11944659,
           11944781-11944949
          Length = 383

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 16/43 (37%), Positives = 26/43 (60%)
 Frame = +1

Query: 271 HTLVTRI*MLMILASISSMPVLQDLYSHNS*NSGISLSRRVVG 399
           HT++ R   L ++A IS   + + L+SHN  N   +++ RVVG
Sbjct: 167 HTIIHRD--LKVVAKISDFGIAR-LFSHNGGNQDCTITDRVVG 206


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,768,995
Number of Sequences: 37544
Number of extensions: 376619
Number of successful extensions: 960
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 960
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)