Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00916
(727 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_9732| Best HMM Match : SH3_1 (HMM E-Value=2e-17) 31 0.95
SB_55819| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.95
SB_41240| Best HMM Match : UCH (HMM E-Value=9.2e-25) 31 1.3
SB_30863| Best HMM Match : Lectin_C (HMM E-Value=2.6e-05) 29 2.9
SB_50158| Best HMM Match : Toxin_16 (HMM E-Value=2) 29 5.1
SB_45908| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_27877| Best HMM Match : M (HMM E-Value=2.1) 29 5.1
SB_4594| Best HMM Match : K_tetra (HMM E-Value=5.6e-24) 29 5.1
SB_47664| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_35784| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_30047| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_21279| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_47025| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_11412| Best HMM Match : APG6 (HMM E-Value=2.52234e-44) 28 8.9
SB_53237| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
>SB_9732| Best HMM Match : SH3_1 (HMM E-Value=2e-17)
Length = 1860
Score = 31.1 bits (67), Expect = 0.95
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 551 PDGWVHGTSWLTGLNGYLPAVYT 619
PDGW HG G+ G+ PA +T
Sbjct: 965 PDGWYHGERLCDGVQGWFPANHT 987
>SB_55819| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2408
Score = 31.1 bits (67), Expect = 0.95
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
Frame = +1
Query: 127 KVTSASKSKQDVSPLQI----LLQMGFRRQRALKALAATGNR 240
+V+S +++QD S L LL+MGF R+ L A+ ATG R
Sbjct: 280 EVSSTPETQQDSSSLPDFTVPLLEMGFSRRHVLHAMQATGTR 321
>SB_41240| Best HMM Match : UCH (HMM E-Value=9.2e-25)
Length = 1088
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Frame = +1
Query: 121 PRKVTSASKSKQDVS----PLQILLQMGFRRQRALKALAATGN 237
P ++ ASK Q + + +++ MGF R +A+KAL AT N
Sbjct: 879 PLRLAGASKGAQAAAVNEEAVSMIISMGFTRDQAIKALKATDN 921
>SB_30863| Best HMM Match : Lectin_C (HMM E-Value=2.6e-05)
Length = 421
Score = 29.5 bits (63), Expect = 2.9
Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 11/62 (17%)
Frame = +3
Query: 267 LTHVSDSN----IDADDP-----REYIFYAS-PTGPLLSQLL-EFWDKSKSTCGWNGAHN 413
L HVS +N ID + P ++ F A TG L Q+ + DKSK+T WNG N
Sbjct: 160 LFHVSTTNGFYQIDNEPPTDNWFNQFSFLARRTTGNLKEQMFFVYGDKSKTTDNWNGYEN 219
Query: 414 FL 419
L
Sbjct: 220 IL 221
>SB_50158| Best HMM Match : Toxin_16 (HMM E-Value=2)
Length = 746
Score = 28.7 bits (61), Expect = 5.1
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +1
Query: 112 NLPPRKVTSASKSKQDVSPLQILLQMGFRRQRALKALAATGNRSV 246
+LPP V S+S+S +DVSP + + RA+ LA +R V
Sbjct: 368 SLPPSDVASSSRSSKDVSPRR-TTTVTLPELRAMDDLADAADRRV 411
>SB_45908| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 723
Score = 28.7 bits (61), Expect = 5.1
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +1
Query: 112 NLPPRKVTSASKSKQDVSPLQILLQMGFRRQRALKALAATGNRSV 246
+LPP V S+S+S +DVSP + + RA+ LA +R V
Sbjct: 76 SLPPSDVASSSRSSKDVSPRR-ATTVTLPELRAMDDLADAADRRV 119
>SB_27877| Best HMM Match : M (HMM E-Value=2.1)
Length = 458
Score = 28.7 bits (61), Expect = 5.1
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +1
Query: 112 NLPPRKVTSASKSKQDVSPLQILLQMGFRRQRALKALAATGNRSV 246
+LPP V S+S+S +DVSP + + RA+ LA +R V
Sbjct: 76 SLPPSDVASSSRSSKDVSPRR-ATTVTLPELRAMDDLADAADRCV 119
>SB_4594| Best HMM Match : K_tetra (HMM E-Value=5.6e-24)
Length = 303
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +3
Query: 249 TRSDWLLTHVSDSNIDADDPREYIFYASPTGPLLSQLLEFWDKSKSTC 392
TR W+ +S ++ D+ REY F PT Q+L F+ K C
Sbjct: 99 TRLSWI---AENSTVNEDNKREYFFDRHPTA--FCQVLNFYRTGKLHC 141
>SB_47664| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 642
Score = 28.7 bits (61), Expect = 5.1
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Frame = +2
Query: 518 IYIEEKEFDISPDGWVHGTSWLTGLNGYLPAVYTRRT---AETDAWTLLKAVSLGNNCSD 688
+Y++ K S W +G WLTG PA++ RT AE + T+ V+ SD
Sbjct: 464 LYVKSKSNLKSSALWWNGPHWLTGPEQGWPALHIERTPAGAEEEKGTVSMVVNTRVPKSD 523
Query: 689 CKSESGSNTDS 721
S N S
Sbjct: 524 ISSVINPNNFS 534
>SB_35784| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 350
Score = 28.7 bits (61), Expect = 5.1
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +1
Query: 112 NLPPRKVTSASKSKQDVSPLQILLQMGFRRQRALKALAATGNRSV 246
+LPP V S+S+S +DVSP + + RA+ LA +R V
Sbjct: 76 SLPPSDVASSSRSSKDVSPRR-ATTVTLPELRAMDDLADAADRRV 119
>SB_30047| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 210
Score = 28.7 bits (61), Expect = 5.1
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +1
Query: 112 NLPPRKVTSASKSKQDVSPLQILLQMGFRRQRALKALAATGNRSV 246
+LPP V S+S+S +DVSP + + RA+ LA +R V
Sbjct: 66 SLPPSDVASSSRSSKDVSPRR-ATTVTLPELRAMDDLADAADRRV 109
>SB_21279| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 515
Score = 28.3 bits (60), Expect = 6.7
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +1
Query: 112 NLPPRKVTSASKSKQDVSPLQILLQMGFRRQRALKALAATGNRSV 246
+LPP V S+S+S +DVSP + + RA+ LA +R V
Sbjct: 76 SLPPSDVASSSRSPKDVSPRR-ATTVTLPELRAMDDLADAADRRV 119
>SB_47025| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1010
Score = 28.3 bits (60), Expect = 6.7
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +1
Query: 112 NLPPRKVTSASKSKQDVSPLQILLQMGFRRQRALKALAATGNRSV 246
+LPP V S+S+S +DVSP + + RA+ LA +R V
Sbjct: 217 SLPPSDVASSSRSPKDVSPRR-ATTVTLPELRAMDDLADAADRRV 260
>SB_11412| Best HMM Match : APG6 (HMM E-Value=2.52234e-44)
Length = 587
Score = 27.9 bits (59), Expect = 8.9
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +1
Query: 112 NLPPRKVTSASKSKQDVSPLQILLQMGFRRQRALKALAATGNRSV 246
+LPP V S S+S +DVSP + + RA+ LA +R V
Sbjct: 355 SLPPSDVASPSRSSKDVSPRR-ATTVTLPELRAMDDLADAADRRV 398
>SB_53237| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 825
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 104 KWLICLHEKLPQLANQNKMFLHCKYFCKWVL 196
+W +CL L NQNK+ ++ ++F WVL
Sbjct: 253 EWTLCLEPMEMYLENQNKVCIY-EFFGLWVL 282
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,129,778
Number of Sequences: 59808
Number of extensions: 447860
Number of successful extensions: 1079
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1079
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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