Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00916
         (727 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z98853-7|CAB57906.1| 1675|Caenorhabditis elegans Hypothetical pr...    32   0.48 
Z75530-10|CAA99796.2| 1675|Caenorhabditis elegans Hypothetical p...    32   0.48 
U32305-15|AAK18858.4|  567|Caenorhabditis elegans Hypothetical p...    29   2.6  
Z98866-10|CAE54923.1| 1089|Caenorhabditis elegans Hypothetical p...    29   3.4  
Z98866-9|CAB11550.4| 1139|Caenorhabditis elegans Hypothetical pr...    29   3.4  
AF034078-1|AAC02976.1|  815|Caenorhabditis elegans putative E1-E...    29   3.4  
U10414-10|AAA19077.1|  176|Caenorhabditis elegans Hypothetical p...    29   4.5  
AL021492-14|CAA16388.2|  473|Caenorhabditis elegans Hypothetical...    29   4.5  
AF077534-2|AAC26284.1|  648|Caenorhabditis elegans Temporarily a...    29   4.5  
AF077534-1|AAK71375.1| 1136|Caenorhabditis elegans Temporarily a...    29   4.5  
AF079509-1|AAC28388.1|  720|Caenorhabditis elegans germline RNA ...    28   5.9  
AF003145-4|AAB57719.1|  720|Caenorhabditis elegans Germ-line hel...    28   5.9  
U55374-2|AAB36865.2|  375|Caenorhabditis elegans Hypothetical pr...    28   7.8  
U55374-1|AAP82639.1|  392|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>Z98853-7|CAB57906.1| 1675|Caenorhabditis elegans Hypothetical
           protein C47E8.8 protein.
          Length = 1675

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 18/35 (51%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
 Frame = +3

Query: 285 SNIDADDPREYIFYASPTGPLLSQLLEFW-DKSKS 386
           SN+DA + RE    AS T PLLS+  +FW ++SKS
Sbjct: 699 SNLDAAN-REIPIEASSTAPLLSRSFQFWRERSKS 732


>Z75530-10|CAA99796.2| 1675|Caenorhabditis elegans Hypothetical
           protein C47E8.8 protein.
          Length = 1675

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 18/35 (51%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
 Frame = +3

Query: 285 SNIDADDPREYIFYASPTGPLLSQLLEFW-DKSKS 386
           SN+DA + RE    AS T PLLS+  +FW ++SKS
Sbjct: 699 SNLDAAN-REIPIEASSTAPLLSRSFQFWRERSKS 732


>U32305-15|AAK18858.4|  567|Caenorhabditis elegans Hypothetical
           protein B0336.11a protein.
          Length = 567

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
 Frame = +3

Query: 615 TRDAP---RKLTRGPYLRQSHLETTARIVNQNRVRTP 716
           T+ AP   R+ +RGP  R+SH+  + R + +NRV  P
Sbjct: 310 TKRAPSLSRRSSRGPKSRKSHIPPSLRPLIENRVNAP 346


>Z98866-10|CAE54923.1| 1089|Caenorhabditis elegans Hypothetical
           protein Y49E10.11b protein.
          Length = 1089

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 322 KIYSRGSSASIFESLTCVNSQSERVEHC 239
           K+Y++G+   IFE L     Q E VE+C
Sbjct: 529 KLYTKGADTVIFERLEHGKEQEEAVEYC 556


>Z98866-9|CAB11550.4| 1139|Caenorhabditis elegans Hypothetical
           protein Y49E10.11a protein.
          Length = 1139

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 322 KIYSRGSSASIFESLTCVNSQSERVEHC 239
           K+Y++G+   IFE L     Q E VE+C
Sbjct: 529 KLYTKGADTVIFERLEHGKEQEEAVEYC 556


>AF034078-1|AAC02976.1|  815|Caenorhabditis elegans putative E1-E2
           ATPase protein.
          Length = 815

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 322 KIYSRGSSASIFESLTCVNSQSERVEHC 239
           K+Y++G+   IFE L     Q E VE+C
Sbjct: 205 KLYTKGADTVIFERLEHGKEQEEAVEYC 232


>U10414-10|AAA19077.1|  176|Caenorhabditis elegans Hypothetical
           protein F42A10.6 protein.
          Length = 176

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 336 TGPLLSQLLEFWDKSKSTCGWNGAHNF 416
           T P L Q ++ W  + +TCGW+    F
Sbjct: 77  TTPGLKQTIKVWSWNMATCGWSSVPTF 103


>AL021492-14|CAA16388.2|  473|Caenorhabditis elegans Hypothetical
           protein Y45F10D.13a protein.
          Length = 473

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = +2

Query: 512 DYIYIEEKEFDISPDGWVHGTSWLTGLNGYLPAVYTRR 625
           D I++ EK      DGW  GTS  TG  G  P  Y +R
Sbjct: 439 DIIFVVEK----CDDGWFIGTSLRTGDFGIFPGNYVKR 472


>AF077534-2|AAC26284.1|  648|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 218, isoform b protein.
          Length = 648

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 551 PDGWVHGTSWLTGLNGYLPAVYTR 622
           PDGW++G     GL G+ P+ Y +
Sbjct: 563 PDGWLYGERAGDGLGGWFPSSYVQ 586


>AF077534-1|AAK71375.1| 1136|Caenorhabditis elegans Temporarily
            assigned gene nameprotein 218, isoform a protein.
          Length = 1136

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 551  PDGWVHGTSWLTGLNGYLPAVYTR 622
            PDGW++G     GL G+ P+ Y +
Sbjct: 1051 PDGWLYGERAGDGLGGWFPSSYVQ 1074


>AF079509-1|AAC28388.1|  720|Caenorhabditis elegans germline RNA
           helicase-3 protein.
          Length = 720

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = -1

Query: 406 APFQPHVDLDLSQNSRSCESKGPVGLA*KIYSRGSSASIFESLTCVNSQSE 254
           A  QP  D+D ++ S SC  K   GL+    S G  +S+F   +C  S+ E
Sbjct: 15  ARHQPISDVDTTEQSSSCIKKDDRGLS----SFGVQSSVFSRRSCRMSELE 61


>AF003145-4|AAB57719.1|  720|Caenorhabditis elegans Germ-line
           helicase protein 3 protein.
          Length = 720

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = -1

Query: 406 APFQPHVDLDLSQNSRSCESKGPVGLA*KIYSRGSSASIFESLTCVNSQSE 254
           A  QP  D+D ++ S SC  K   GL+    S G  +S+F   +C  S+ E
Sbjct: 15  ARHQPISDVDTTEQSSSCIKKDDRGLS----SFGVQSSVFSRRSCRMSELE 61


>U55374-2|AAB36865.2|  375|Caenorhabditis elegans Hypothetical
           protein T02C5.1a protein.
          Length = 375

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +3

Query: 309 REYIFYASPTGPLLSQLLEFWDKSKSTCGWNG 404
           R   F  +P G  + +L +  D S + CGW G
Sbjct: 38  RGVCFQCTPCGDFMYELAKCTDTSNTVCGWCG 69


>U55374-1|AAP82639.1|  392|Caenorhabditis elegans Hypothetical
           protein T02C5.1b protein.
          Length = 392

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +3

Query: 309 REYIFYASPTGPLLSQLLEFWDKSKSTCGWNG 404
           R   F  +P G  + +L +  D S + CGW G
Sbjct: 38  RGVCFQCTPCGDFMYELAKCTDTSNTVCGWCG 69


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,201,937
Number of Sequences: 27780
Number of extensions: 329169
Number of successful extensions: 747
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)