Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00916
         (727 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    24   1.7  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   2.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.1  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.8  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.8  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   6.8  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   9.0  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 86  NAYFWGKWLICLHEKLPQLA 145
           N   +G W+ CL   LP+LA
Sbjct: 585 NLAVYGVWINCLDPNLPKLA 604


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +3

Query: 606 LLCTRDAPRKLTRGPYLRQSHLETTARIVNQNRVRTPIVR 725
           LL  + +PR LT G +  +  LET     +Q + +  +++
Sbjct: 488 LLNIQKSPRTLTLGIFAEKLRLETKELFSSQQKTKNNLMK 527


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 321 FYASPTGPLLSQLLEFWDK 377
           F+  PTG LL   LEF D+
Sbjct: 185 FHLLPTGELLVHSLEFSDQ 203


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 321 FYASPTGPLLSQLLEFWDK 377
           F+  PTG LL   LEF D+
Sbjct: 185 FHLLPTGELLVHSLEFSDQ 203


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +1

Query: 112 NLPPRKVTSASKSKQDVSP 168
           +L P++  S + SK+D+SP
Sbjct: 403 HLTPKRFHSRAASKEDLSP 421


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +1

Query: 112 NLPPRKVTSASKSKQDVSP 168
           +L P++  S + SK+D+SP
Sbjct: 403 HLTPKRFHSRAASKEDLSP 421


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +1

Query: 589 LKRVSTCCVHATHRG 633
           LK +  C  H TH+G
Sbjct: 564 LKMIQACSHHLTHKG 578


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 94  FLGKMANLPPRKVTSAS 144
           FLG++AN  P+ +T  S
Sbjct: 81  FLGRLANPTPQSITLIS 97


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,608
Number of Sequences: 438
Number of extensions: 4174
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)