Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00916
         (727 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g03405.1 68416.m00338 hypothetical protein temporary automate...    32   0.34 
At5g01790.1 68418.m00098 expressed protein                             28   5.5  
At5g05340.1 68418.m00575 peroxidase, putative similar to peroxid...    27   9.6  
At1g24290.1 68414.m03065 AAA-type ATPase family protein similar ...    27   9.6  

>At3g03405.1 68416.m00338 hypothetical protein temporary automated
           functional assignment
          Length = 193

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +2

Query: 515 YIYIEEKEFDISPDGWVHGTSWLTGLNGYLPAVYTRRTAETDAWT 649
           +I  EEK+  +  +G+ H  S++ G NGYL  +    +  T+ WT
Sbjct: 111 FIIDEEKKVVMVSEGFKHRISYILGENGYLRELDLGESIYTNCWT 155


>At5g01790.1 68418.m00098 expressed protein 
          Length = 188

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = -2

Query: 723 SLSVFEPDSDLQSEQLFPSETALSKVHASVSAVRRVY---TAGRYPFKPVSHEVPWTHPS 553
           SLS+ + D+   S +L  ++   S V A+  + R  Y    AG  PF+  SH     HPS
Sbjct: 11  SLSLKKQDTATFSGKLPSTKQRFSSVSAACPSFRIYYYDGAAGAVPFEWESHPGTPKHPS 70

Query: 552 GEI 544
            E+
Sbjct: 71  SEL 73


>At5g05340.1 68418.m00575 peroxidase, putative similar to peroxidase
           [Nicotiana tabacum] gi|5381253|dbj|BAA82306; similar to
           Peroxidase P7 [Brassica rapa (Turnip)] SWISS-PROT:P00434
          Length = 324

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 227 AAKAFNALCLLKPICKSICSGETSCFDLLA 138
           +A+ FN +  +K   +  C G  SC D+LA
Sbjct: 101 SARGFNVIDNIKSAVEKACPGVVSCADILA 130


>At1g24290.1 68414.m03065 AAA-type ATPase family protein similar to
           Werner helicase interacting protein [Homo sapiens]
           GI:14349166; contains Pfam profiles PF00004: ATPase
           family associated with various cellular activities
           (AAA), PF00627: UBA/TS-N domain; contains
           ATP/GTP-binding site motif A (P-loop)
          Length = 525

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 169 LQILLQMGFRRQRALKALAATGNRSVQLA 255
           ++ L+ MGF    A +AL ATG  S+Q A
Sbjct: 1   MEQLVSMGFSSDLAAEALTATGGDSIQKA 29


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,376,650
Number of Sequences: 28952
Number of extensions: 310761
Number of successful extensions: 784
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)