Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00915
         (726 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.06 |||Rho GDP dissociation inhibitor Rdi1 |Schizosaccha...    86   6e-18
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo...    27   2.7  
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual    27   3.6  
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    26   4.8  
SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14 |Schizo...    26   6.3  
SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   8.3  

>SPAC6F12.06 |||Rho GDP dissociation inhibitor Rdi1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 205

 Score = 85.8 bits (203), Expect = 6e-18
 Identities = 41/96 (42%), Positives = 57/96 (59%)
 Frame = +1

Query: 439 LDRPQKAGIRDKGGCTIPNKDRFFVQREIVHGLKYVQKTYRLGVPVDKMTHMVGSYPPKI 618
           +++ +K G   K G       +F VQ E++ GL+YVQ   R G  VDK + M+GSY P  
Sbjct: 96  VEQIRKKGFTIKEGSEFKIGVKFRVQHEVISGLRYVQTVRRRGFVVDKTSTMIGSYGPSE 155

Query: 619 EIQSYTTPPEDAPSGMMARGSYSVNSLFTDDDKNVH 726
               +T+ P++AP+GM+ARG Y  N  F DDDK VH
Sbjct: 156 TPYDFTSEPDEAPTGMLARGHYEANGKFVDDDKVVH 191



 Score = 43.6 bits (98), Expect = 3e-05
 Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
 Frame = +2

Query: 245 REDLEEILAADQEDESLRKYKEALLGQAQAGAVIVEPDDPRKVIVKKLALCVVGR--XXX 418
           ++ L E +  D EDESL+K+K +L      G      +D R V++ KL+L V GR     
Sbjct: 32  KKSLNEYMKMDAEDESLQKWKASL---GITGTGYSPSNDRRTVVILKLSLLVDGRDPVDV 88

Query: 419 XXXXXXXXXXXKKQVFVIKEGVQYRIRIDF 508
                      +K+ F IKEG +++I + F
Sbjct: 89  NMEDAASVEQIRKKGFTIKEGSEFKIGVKF 118


>SPAC630.05 |gyp7||GTPase activating protein Gyp7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 470 IKEGVQYRIRIDFSFSARSCTV*STCRRP 556
           I+E V+    +D+SFS R C++ S   RP
Sbjct: 103 IREWVEIPQHLDYSFSVRLCSIYSIIFRP 131


>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 684

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +1

Query: 460 GIRDKGGCTIPNKDRFFVQ 516
           GIRDKGG  I NK+  ++Q
Sbjct: 85  GIRDKGGVEISNKNDPYIQ 103


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
            Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
 Frame = -1

Query: 651  ILGGRCVRLNLNFGGIGADHMSH-LVNWNAQSVGLLHVLQTVHD 523
            +L G C  L L F G G       L+N+    + L H+    HD
Sbjct: 1096 VLAGICFSLGLRFAGTGNPKAKEILINFLDSFIRLCHLPAKTHD 1139


>SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 566

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 166 LENLK*PIHPKRIQRKKKSNPHISHLQ 246
           L + + PI PK     +K NP+ISHL+
Sbjct: 493 LRHTEPPIIPKLAPIDEKGNPNISHLK 519


>SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 569

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +1

Query: 559 RLGVPVDKMTHMVGSYPPKIEIQSYTTPPEDAPSG 663
           R+G  V+ +T +   Y   +  +S +  P+ AP+G
Sbjct: 454 RMGYSVNNLTGVTNEYSESLAKRSLSEKPKTAPTG 488


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,743,197
Number of Sequences: 5004
Number of extensions: 52150
Number of successful extensions: 135
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)