Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00915
(726 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0132 - 12166009-12166089,12166197-12166321,12166489-121667... 79 4e-15
02_05_0539 + 29846439-29846711,29846819-29846885,29847832-298480... 75 8e-14
01_06_1776 - 39815634-39815714,39815761-39815927,39816278-398164... 60 1e-09
08_02_1554 + 27841801-27842007,27842282-27842455,27842554-278426... 28 8.7
02_03_0307 + 17546263-17546299,17546522-17548018,17548859-175489... 28 8.7
>06_02_0132 -
12166009-12166089,12166197-12166321,12166489-12166710,
12168194-12168260,12168424-12168741
Length = 270
Score = 79.0 bits (186), Expect = 4e-15
Identities = 36/85 (42%), Positives = 50/85 (58%)
Frame = +1
Query: 472 KGGCTIPNKDRFFVQREIVHGLKYVQKTYRLGVPVDKMTHMVGSYPPKIEIQSYTTPPED 651
K G T K F V IV GL+Y ++ G+ VDK M+G++ P++E +Y TP E
Sbjct: 169 KEGSTYRLKFTFSVSSNIVSGLRYTNTVWKAGIRVDKTKEMLGTFSPQLEPYTYVTPEET 228
Query: 652 APSGMMARGSYSVNSLFTDDDKNVH 726
PSG+ ARGSYS + F DDD+ +
Sbjct: 229 TPSGVFARGSYSAKTKFVDDDRKCY 253
Score = 51.2 bits (117), Expect = 8e-07
Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Frame = +2
Query: 245 REDLEEILAADQEDESLRKYKEALLGQAQAGAV--IVEPDDPRKVIVKKLALCVVGRXXX 418
R ++E L D+EDESLR++KE LLG +V +EPD V + L + GR
Sbjct: 95 RVSIKEQLEMDKEDESLRRWKEQLLGSVDLNSVGESLEPD----VRITSLCILSPGRPDV 150
Query: 419 XXXXXXXXXXXKKQVFVIKEGVQYRIRIDFSFSA 520
K+ F +KEG YR++ FS S+
Sbjct: 151 LLPLPVEPSNSKEPWFTLKEGSTYRLKFTFSVSS 184
>02_05_0539 +
29846439-29846711,29846819-29846885,29847832-29848050,
29848200-29848324,29848423-29848503
Length = 254
Score = 74.5 bits (175), Expect = 8e-14
Identities = 35/85 (41%), Positives = 47/85 (55%)
Frame = +1
Query: 472 KGGCTIPNKDRFFVQREIVHGLKYVQKTYRLGVPVDKMTHMVGSYPPKIEIQSYTTPPED 651
K G K F V IV GL+Y ++ G+ VD M+G++ P+ E +Y TP E
Sbjct: 153 KEGSLYKLKFTFSVSNNIVSGLRYTNAVWKTGIKVDSHKEMLGTFSPQPEPYTYVTPEET 212
Query: 652 APSGMMARGSYSVNSLFTDDDKNVH 726
PSGM ARGSYS + F DDD+ +
Sbjct: 213 TPSGMFARGSYSARTKFLDDDRKCY 237
Score = 43.2 bits (97), Expect = 2e-04
Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Frame = +2
Query: 245 REDLEEILAADQEDESLRKYKEALLGQAQAGAV--IVEPDDPRKVIVKKLALCVVGRXXX 418
R +++ L D++DESLR++KE LLG +V +EPD V + LA+ GR
Sbjct: 80 RVSIKDQLEKDKDDESLRRWKEQLLGSVDLNSVGETLEPD----VKIMSLAILSPGR-PD 134
Query: 419 XXXXXXXXXXXKKQVFVIKEGVQYRIRIDFSFS 517
K F +KEG Y+++ FS S
Sbjct: 135 IFLPLPVEPNAKGVWFTLKEGSLYKLKFTFSVS 167
>01_06_1776 -
39815634-39815714,39815761-39815927,39816278-39816496,
39816614-39816680,39816771-39816932
Length = 231
Score = 60.5 bits (140), Expect = 1e-09
Identities = 29/72 (40%), Positives = 40/72 (55%)
Frame = +1
Query: 472 KGGCTIPNKDRFFVQREIVHGLKYVQKTYRLGVPVDKMTHMVGSYPPKIEIQSYTTPPED 651
K G T + F V IV GLKY ++ GV V+ M+G++ P++E +Y E
Sbjct: 116 KDGSTYSFRFSFIVSNNIVSGLKYTNTVWKTGVRVENQKVMLGTFSPQLEPYTYEGEEET 175
Query: 652 APSGMMARGSYS 687
P+GM ARGSYS
Sbjct: 176 TPAGMFARGSYS 187
Score = 38.3 bits (85), Expect = 0.006
Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Frame = +2
Query: 254 LEEILAADQEDESLRKYKEALLGQAQAGAVIVEPDDPRKVIVKKLALCVVGRXXXXXXXX 433
L+E L D++DESLR++KE LLGQ + E +P VK L L ++
Sbjct: 46 LKEQLELDKDDESLRRWKEQLLGQVDT-EQLGETAEPE---VKVLNLTILSPDRPDLVLP 101
Query: 434 XXXXXXKK-QVFVIKEGVQYRIRIDFSFS 517
+K F +K+G Y R F S
Sbjct: 102 IPFVPDEKGYAFALKDGSTYSFRFSFIVS 130
>08_02_1554 +
27841801-27842007,27842282-27842455,27842554-27842653,
27843273-27843725,27843936-27844469,27844500-27844580,
27844690-27844781,27844890-27844963,27845071-27845293,
27845429-27845522,27845607-27845761,27845899-27846129,
27846803-27847003,27847257-27847382,27847497-27847558,
27847775-27847892,27848040-27848324,27848475-27848513
Length = 1082
Score = 27.9 bits (59), Expect = 8.7
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = +2
Query: 254 LEEILAADQEDESLRKYKEALLGQAQAGAVIVEPDDPRKVIVKKLALCVV 403
L + AAD++ KYK LG + AV+V PD + + L L V
Sbjct: 199 LLRVQAADRKYVHKFKYKGVELGVILSYAVLVHPDTAARASISNLQLVTV 248
>02_03_0307 +
17546263-17546299,17546522-17548018,17548859-17548949,
17549054-17549621,17550591-17550670,17550993-17551077,
17551172-17551263,17551355-17551423,17551587-17551655,
17552217-17552510,17552761-17552797,17552883-17552972,
17553520-17553585,17553704-17553818,17553902-17553940,
17554519-17554700
Length = 1136
Score = 27.9 bits (59), Expect = 8.7
Identities = 18/47 (38%), Positives = 22/47 (46%)
Frame = -1
Query: 660 GRRILGGRCVRLNLNFGGIGADHMSHLVNWNAQSVGLLHVLQTVHDL 520
GRR LG + VR LNF G D + A+ + L L VH L
Sbjct: 336 GRRPLGDKSVRRKLNFEGDAVDFEGNREFSRAKLMEDLRCLAKVHGL 382
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,340,214
Number of Sequences: 37544
Number of extensions: 360135
Number of successful extensions: 944
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 943
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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