Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00915
         (726 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42593| Best HMM Match : Rho_GDI (HMM E-Value=3.7e-17)               65   6e-11
SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)                 29   5.1  
SB_38432| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_6761| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.7  
SB_48238| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  
SB_9112| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.9  

>SB_42593| Best HMM Match : Rho_GDI (HMM E-Value=3.7e-17)
          Length = 339

 Score = 64.9 bits (151), Expect = 6e-11
 Identities = 29/49 (59%), Positives = 33/49 (67%)
 Frame = +1

Query: 580 KMTHMVGSYPPKIEIQSYTTPPEDAPSGMMARGSYSVNSLFTDDDKNVH 726
           K + MVGSY PK E   Y TP ++AP GMMARG Y + S F DDDKN H
Sbjct: 277 KDSFMVGSYGPKFEPHEYLTPIDEAPKGMMARGKYIIRSKFIDDDKNSH 325



 Score = 34.7 bits (76), Expect = 0.077
 Identities = 19/46 (41%), Positives = 27/46 (58%)
 Frame = +2

Query: 257 EEILAADQEDESLRKYKEALLGQAQAGAVIVEPDDPRKVIVKKLAL 394
           EEI   D +DE+L KYK+ LLG          P  P+ V+V+K+A+
Sbjct: 31  EEIQNLDADDEALVKYKQTLLGVTPEEL----PKGPKNVVVEKVAI 72


>SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)
          Length = 2436

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +2

Query: 239 TSREDLEEILAADQEDESLRKYKEALLGQAQAGA-VIVEPDDPRKVIVKKLALCVV 403
           T+   + ++  +D ED++   YKE   G+  +GA    EPDD    + ++++   +
Sbjct: 776 TAASRIRQLAMSDSEDDASSSYKEKPAGRRSSGASQNSEPDDDILTLSQRISQAAI 831


>SB_38432| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 601

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 592 MVGSYPPKIEIQSYTTPPEDAPSGMMARGSYSVNSLF 702
           ++ SY   I      TPPE A SGM + G Y+ +  +
Sbjct: 543 VINSYGQYITTAREQTPPEMAASGMASSGQYTSSGTY 579


>SB_6761| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 121

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 17/64 (26%), Positives = 28/64 (43%)
 Frame = +1

Query: 22  RHFFGLKNLETANRCKFYNYLVFKCFFLFRLLVLCKKSFVTCYKKRICLENLK*PIHPKR 201
           + FF  K + T N     N    + FFL     LC +  +  +   ICL ++   I P R
Sbjct: 52  QEFFIDKKMATQNEYASQNKRTERTFFLITKAALCLEYILGRFVVLICLSSVVSAIQPFR 111

Query: 202 IQRK 213
           + ++
Sbjct: 112 LHKE 115


>SB_48238| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 146

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +2

Query: 305 KEALLGQAQAGAVIVEPDDPRKVIVKKLALCVVGR 409
           +E LL +   G  IVEP DP  +I + +A C++ R
Sbjct: 8   REVLL-EGVEGVRIVEPCDPSGLIAENVAHCILSR 41


>SB_9112| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 171

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +2

Query: 305 KEALLGQAQAGAVIVEPDDPRKVIVKKLALCVVGR 409
           +E LL +   G  IVEP DP  +I + +A C++ R
Sbjct: 32  REVLL-EGVEGVRIVEPCDPSGLIAENVAHCILSR 65


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,920,912
Number of Sequences: 59808
Number of extensions: 407460
Number of successful extensions: 789
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)