Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00915
(726 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40426-5|AAF99947.1| 191|Caenorhabditis elegans Rho gdi protein... 91 1e-18
U36431-1|AAD10299.1| 191|Caenorhabditis elegans Rho GDP dissoci... 91 1e-18
U39472-4|AAK31389.2| 319|Caenorhabditis elegans Helix loop heli... 29 3.4
U39472-3|AAN39683.1| 320|Caenorhabditis elegans Helix loop heli... 29 3.4
U39472-2|AAN39684.1| 324|Caenorhabditis elegans Helix loop heli... 29 3.4
M59940-2|AAA16290.1| 320|Caenorhabditis elegans CeMyoD, alterna... 29 3.4
M59940-1|AAA16289.1| 324|Caenorhabditis elegans CeMyoD protein. 29 3.4
>U40426-5|AAF99947.1| 191|Caenorhabditis elegans Rho gdi protein 1
protein.
Length = 191
Score = 90.6 bits (215), Expect = 1e-18
Identities = 42/74 (56%), Positives = 50/74 (67%)
Frame = +1
Query: 505 FFVQREIVHGLKYVQKTYRLGVPVDKMTHMVGSYPPKIEIQSYTTPPEDAPSGMMARGSY 684
F VQREI GL Y K R G+ V+ +M+GSY PK+EIQ Y +P E+APSGMM RG Y
Sbjct: 106 FHVQREITSGLHYKHKVKRSGITVENEKYMMGSYAPKLEIQEYKSPNEEAPSGMMHRGKY 165
Query: 685 SVNSLFTDDDKNVH 726
V S TDDD NV+
Sbjct: 166 KVYSKITDDDNNVY 179
Score = 55.6 bits (128), Expect = 3e-08
Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Frame = +2
Query: 245 REDLEEILAADQEDESLRKYKEALLGQAQAGAVIVEPDDPRKVIVKKLALCVVGRXXXXX 424
++ ++E+L AD+EDESL+ YK LLGQ G VIV+ +P +VIV+ + L + G+
Sbjct: 21 QKSIDELLNADKEDESLKVYKAKLLGQ---GTVIVDEKNPLRVIVRSVELLINGKTAQSF 77
Query: 425 XXXXXXXXXKKQVFV-IKEGVQYRIRIDF 508
+ V IKEG YR+ F
Sbjct: 78 DLSDPAKLVNSDLSVSIKEGSNYRLSFAF 106
>U36431-1|AAD10299.1| 191|Caenorhabditis elegans Rho GDP
dissociation inhibitor protein.
Length = 191
Score = 90.6 bits (215), Expect = 1e-18
Identities = 42/74 (56%), Positives = 50/74 (67%)
Frame = +1
Query: 505 FFVQREIVHGLKYVQKTYRLGVPVDKMTHMVGSYPPKIEIQSYTTPPEDAPSGMMARGSY 684
F VQREI GL Y K R G+ V+ +M+GSY PK+EIQ Y +P E+APSGMM RG Y
Sbjct: 106 FHVQREITSGLHYKHKVKRSGITVENEKYMMGSYAPKLEIQEYKSPNEEAPSGMMHRGKY 165
Query: 685 SVNSLFTDDDKNVH 726
V S TDDD NV+
Sbjct: 166 KVYSKITDDDNNVY 179
Score = 55.6 bits (128), Expect = 3e-08
Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Frame = +2
Query: 245 REDLEEILAADQEDESLRKYKEALLGQAQAGAVIVEPDDPRKVIVKKLALCVVGRXXXXX 424
++ ++E+L AD+EDESL+ YK LLGQ G VIV+ +P +VIV+ + L + G+
Sbjct: 21 QKSIDELLNADKEDESLKVYKAKLLGQ---GTVIVDEKNPLRVIVRSVELLINGKTAQSF 77
Query: 425 XXXXXXXXXKKQVFV-IKEGVQYRIRIDF 508
+ V IKEG YR+ F
Sbjct: 78 DLSDPAKLVNSDLSVSIKEGSNYRLSFAF 106
>U39472-4|AAK31389.2| 319|Caenorhabditis elegans Helix loop helix
protein 1, isoformc protein.
Length = 319
Score = 29.1 bits (62), Expect = 3.4
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Frame = +1
Query: 484 TIPNKDRFFVQREIVHG-LKYVQKTYRLGVPVDKMTH-MVGSYPPKIEIQSYTTPPED-A 654
T PN ++ + EI+ + Y+ R+ KMT M + ++ Q PP D
Sbjct: 182 TCPNPNQRLPKVEILRSAIDYINNLERMLQQAGKMTKIMEQNQHLQMTQQINGAPPHDYV 241
Query: 655 PSGMMARGSYSVNSLFTDDD 714
S A SY+ ++F DDD
Sbjct: 242 TSSHFASSSYNPENMFDDDD 261
>U39472-3|AAN39683.1| 320|Caenorhabditis elegans Helix loop helix
protein 1, isoforma protein.
Length = 320
Score = 29.1 bits (62), Expect = 3.4
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Frame = +1
Query: 484 TIPNKDRFFVQREIVHG-LKYVQKTYRLGVPVDKMTH-MVGSYPPKIEIQSYTTPPED-A 654
T PN ++ + EI+ + Y+ R+ KMT M + ++ Q PP D
Sbjct: 178 TCPNPNQRLPKVEILRSAIDYINNLERMLQQAGKMTKIMEQNQHLQMTQQINGAPPHDYV 237
Query: 655 PSGMMARGSYSVNSLFTDDD 714
S A SY+ ++F DDD
Sbjct: 238 TSSHFASSSYNPENMFDDDD 257
>U39472-2|AAN39684.1| 324|Caenorhabditis elegans Helix loop helix
protein 1, isoformb protein.
Length = 324
Score = 29.1 bits (62), Expect = 3.4
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Frame = +1
Query: 484 TIPNKDRFFVQREIVHG-LKYVQKTYRLGVPVDKMTH-MVGSYPPKIEIQSYTTPPED-A 654
T PN ++ + EI+ + Y+ R+ KMT M + ++ Q PP D
Sbjct: 182 TCPNPNQRLPKVEILRSAIDYINNLERMLQQAGKMTKIMEQNQHLQMTQQINGAPPHDYV 241
Query: 655 PSGMMARGSYSVNSLFTDDD 714
S A SY+ ++F DDD
Sbjct: 242 TSSHFASSSYNPENMFDDDD 261
>M59940-2|AAA16290.1| 320|Caenorhabditis elegans CeMyoD,
alternatively spliced productprotein.
Length = 320
Score = 29.1 bits (62), Expect = 3.4
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Frame = +1
Query: 484 TIPNKDRFFVQREIVHG-LKYVQKTYRLGVPVDKMTH-MVGSYPPKIEIQSYTTPPED-A 654
T PN ++ + EI+ + Y+ R+ KMT M + ++ Q PP D
Sbjct: 178 TCPNPNQRLPKVEILRSAIDYINNLERMLQQAGKMTKIMEQNQHLQMTQQINGAPPHDYV 237
Query: 655 PSGMMARGSYSVNSLFTDDD 714
S A SY+ ++F DDD
Sbjct: 238 TSSHFASSSYNPENMFDDDD 257
>M59940-1|AAA16289.1| 324|Caenorhabditis elegans CeMyoD protein.
Length = 324
Score = 29.1 bits (62), Expect = 3.4
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Frame = +1
Query: 484 TIPNKDRFFVQREIVHG-LKYVQKTYRLGVPVDKMTH-MVGSYPPKIEIQSYTTPPED-A 654
T PN ++ + EI+ + Y+ R+ KMT M + ++ Q PP D
Sbjct: 182 TCPNPNQRLPKVEILRSAIDYINNLERMLQQAGKMTKIMEQNQHLQMTQQINGAPPHDYV 241
Query: 655 PSGMMARGSYSVNSLFTDDD 714
S A SY+ ++F DDD
Sbjct: 242 TSSHFASSSYNPENMFDDDD 261
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,353,085
Number of Sequences: 27780
Number of extensions: 301941
Number of successful extensions: 865
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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