Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00915
         (726 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   3.9  
DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              22   6.8  
DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              22   6.8  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   6.8  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -1

Query: 654 RILGGRCVRLNLNFGG 607
           RIL G  +RL  NFGG
Sbjct: 43  RILDGYDIRLRPNFGG 58


>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 248 EDLEEILAADQEDESLRKYKEALLGQ 325
           +D+ E+   D EDE  ++Y E +L Q
Sbjct: 45  DDINEV-NFDVEDEKPQRYNECILKQ 69


>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 248 EDLEEILAADQEDESLRKYKEALLGQ 325
           +D+ E+   D EDE  ++Y E +L Q
Sbjct: 45  DDINEV-NFDVEDEKPQRYNECILKQ 69


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -3

Query: 502 DPYSVLYTLLYHEYLLFEVGQVPS 431
           D +  L    Y EY ++E+G++ S
Sbjct: 396 DAFKDLQDKYYEEYKMYELGELAS 419


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,946
Number of Sequences: 438
Number of extensions: 3451
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)