Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00915
         (726 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g07880.1 68416.m00963 Rho GDP-dissociation inhibitor family p...    73   2e-13
At1g62450.1 68414.m07046 Rho GDP-dissociation inhibitor family p...    68   6e-12
At1g12070.1 68414.m01393 Rho GDP-dissociation inhibitor family p...    62   4e-10
At2g03470.2 68415.m00306 myb family transcription factor / ELM2 ...    29   2.4  
At2g03470.1 68415.m00305 myb family transcription factor / ELM2 ...    29   2.4  
At1g23790.1 68414.m03001 expressed protein                             29   3.1  

>At3g07880.1 68416.m00963 Rho GDP-dissociation inhibitor family
           protein similar to SP|P52565 Rho GDP-dissociation
           inhibitor 1 (Rho GDI 1) (Rho-GDI alpha) {Homo sapiens};
           contains Pfam profile PF02115: RHO protein GDP
           dissociation inhibitor
          Length = 240

 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 34/85 (40%), Positives = 47/85 (55%)
 Frame = +1

Query: 472 KGGCTIPNKDRFFVQREIVHGLKYVQKTYRLGVPVDKMTHMVGSYPPKIEIQSYTTPPED 651
           K G     K  F V   IV GL+Y    ++ GV VD+   M+G++ P++E  ++  P E 
Sbjct: 140 KEGSKYNLKFTFHVNNNIVSGLRYTNTVWKTGVKVDRAKEMLGTFSPQLEPYNHVMPEET 199

Query: 652 APSGMMARGSYSVNSLFTDDDKNVH 726
            PSGM ARGSYS  + F DDD   +
Sbjct: 200 TPSGMFARGSYSARTKFLDDDNKCY 224



 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 30/85 (35%), Positives = 42/85 (49%)
 Frame = +2

Query: 254 LEEILAADQEDESLRKYKEALLGQAQAGAVIVEPDDPRKVIVKKLALCVVGRXXXXXXXX 433
           ++E L  D++DESLRK+KE LLG       I E  DP +V +  LA+   GR        
Sbjct: 70  IKEHLEKDKDDESLRKWKEQLLGSVDV-TNIGETLDP-EVRIDSLAIISPGR-PDIVLLV 126

Query: 434 XXXXXXKKQVFVIKEGVQYRIRIDF 508
                 K   F +KEG +Y ++  F
Sbjct: 127 PENGNPKGMWFTLKEGSKYNLKFTF 151


>At1g62450.1 68414.m07046 Rho GDP-dissociation inhibitor family
           protein similar to SP|P52565 Rho GDP-dissociation
           inhibitor 1 (Rho GDI 1) (Rho-GDI alpha) {Homo sapiens};
           contains Pfam profile PF02115: RHO protein GDP
           dissociation inhibitor
          Length = 223

 Score = 68.1 bits (159), Expect = 6e-12
 Identities = 36/97 (37%), Positives = 47/97 (48%)
 Frame = +1

Query: 436 GLDRPQKAGIRDKGGCTIPNKDRFFVQREIVHGLKYVQKTYRLGVPVDKMTHMVGSYPPK 615
           GL  P+      K G        F V   IV GL+Y    ++ GV VD    M+G++ P+
Sbjct: 113 GLPNPKGPWFTIKEGSKYTLVFNFRVTNNIVSGLRYNNTVWKTGVKVDSTKAMLGTFSPQ 172

Query: 616 IEIQSYTTPPEDAPSGMMARGSYSVNSLFTDDDKNVH 726
            E   +  P E  PSGM ARGSYS  + F DDD   +
Sbjct: 173 AESYQHVMPEEMTPSGMFARGSYSARTKFIDDDNKCY 209



 Score = 35.1 bits (77), Expect = 0.048
 Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
 Frame = +2

Query: 254 LEEILAADQEDESLRKYKEALLGQAQAGAVIVEPDDPRKVIVKKLALCVVGRXXXXXXXX 433
           L+E L  D++DESLR++KE LLG      V   PD   K++   L +    R        
Sbjct: 53  LKEQLERDKDDESLRRWKEQLLGVVDLEDVGETPDPVVKIL--DLTIRSPDREEMVLTIP 110

Query: 434 XXXXXXKK-QVFVIKEGVQYRIRIDF 508
                  K   F IKEG +Y +  +F
Sbjct: 111 EDGLPNPKGPWFTIKEGSKYTLVFNF 136


>At1g12070.1 68414.m01393 Rho GDP-dissociation inhibitor family
           protein similar to SP|P52565 Rho GDP-dissociation
           inhibitor 1 (Rho GDI 1) (Rho-GDI alpha) {Homo sapiens};
           contains Pfam profile PF02115: RHO protein GDP
           dissociation inhibitor
          Length = 223

 Score = 62.1 bits (144), Expect = 4e-10
 Identities = 29/74 (39%), Positives = 42/74 (56%)
 Frame = +1

Query: 505 FFVQREIVHGLKYVQKTYRLGVPVDKMTHMVGSYPPKIEIQSYTTPPEDAPSGMMARGSY 684
           F V   IV GL+Y    ++ G+ V     M+G++ P+ E  ++    E APSG++ RGSY
Sbjct: 136 FRVTNNIVSGLQYSNTVWKTGIKVYSRKEMLGTFSPQAEPYTHVMFEETAPSGLLVRGSY 195

Query: 685 SVNSLFTDDDKNVH 726
           SV S F DDD   +
Sbjct: 196 SVKSKFVDDDNQCY 209



 Score = 35.5 bits (78), Expect = 0.036
 Identities = 18/41 (43%), Positives = 25/41 (60%)
 Frame = +2

Query: 254 LEEILAADQEDESLRKYKEALLGQAQAGAVIVEPDDPRKVI 376
           L+E L  D++DESLR++KE LLG      V   PD   K++
Sbjct: 53  LKEQLEKDKDDESLRRWKEQLLGSVDLEEVGETPDPLVKIL 93


>At2g03470.2 68415.m00306 myb family transcription factor / ELM2
           domain-containing protein contains Pfam profile: PF00249
           Myb-like DNA-binding domain; contains Pfam profile:
           PF01448 ELM2 domain
          Length = 449

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 17/68 (25%), Positives = 32/68 (47%)
 Frame = +2

Query: 155 NEYVWRT*SSPYTRRGYRGRRNQILI*ATSREDLEEILAADQEDESLRKYKEALLGQAQA 334
           +++ W+     YT    +  R Q+L+ +  + D+ E +  +  D+S  + KE L G+   
Sbjct: 99  SDFTWKPVEDVYTCLMNQPPRKQVLVGSNHQADIPEFVKEEILDQSEARTKEDLEGKLMR 158

Query: 335 GAVIVEPD 358
             VI   D
Sbjct: 159 KCVIPMSD 166


>At2g03470.1 68415.m00305 myb family transcription factor / ELM2
           domain-containing protein contains Pfam profile: PF00249
           Myb-like DNA-binding domain; contains Pfam profile:
           PF01448 ELM2 domain
          Length = 450

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 17/68 (25%), Positives = 32/68 (47%)
 Frame = +2

Query: 155 NEYVWRT*SSPYTRRGYRGRRNQILI*ATSREDLEEILAADQEDESLRKYKEALLGQAQA 334
           +++ W+     YT    +  R Q+L+ +  + D+ E +  +  D+S  + KE L G+   
Sbjct: 100 SDFTWKPVEDVYTCLMNQPPRKQVLVGSNHQADIPEFVKEEILDQSEARTKEDLEGKLMR 159

Query: 335 GAVIVEPD 358
             VI   D
Sbjct: 160 KCVIPMSD 167


>At1g23790.1 68414.m03001 expressed protein 
          Length = 518

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
 Frame = +3

Query: 222 KSSYKPPPEKT*RR----SLLLTKRMSPFGSTRKHCLDKPKQALSLLNRM 359
           K +  PPP    RR    SLL  +R +P  +++   L+KP+++LSL  R+
Sbjct: 246 KKNDSPPPSVRTRRATAASLLEDEREAPKSTSKYSKLEKPEKSLSLPGRL 295


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,494,668
Number of Sequences: 28952
Number of extensions: 281252
Number of successful extensions: 696
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)