Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00914
         (719 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    24   1.4  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    23   3.3  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    22   4.4  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    22   5.8  

>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 579 IYFTKAVALLPMEQLKNS*RAVRCVFVTSAS 671
           +  +K  ALLP+++     + V CV++TS S
Sbjct: 11  VLISKIFALLPVKKHHRLEKLVPCVYLTSFS 41


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -1

Query: 512 CYRAFILYSPD 480
           C RA ILY+PD
Sbjct: 315 CLRAIILYNPD 325


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = -1

Query: 281 GSVGVVGGECAST 243
           GSVG+VGG+ AS+
Sbjct: 153 GSVGLVGGDPASS 165


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -3

Query: 579 FFNLSSHHYVRSYELGNSP 523
           F+N  +H++ R YE   +P
Sbjct: 401 FYNFLNHNFDRHYEENRAP 419


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,853
Number of Sequences: 336
Number of extensions: 2459
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19155320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)