Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00914
         (719 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.03c |||neddylation protein Dcn1|Schizosaccharomyces pomb...    34   0.023
SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomy...    26   6.2  

>SPBC839.03c |||neddylation protein Dcn1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 251

 Score = 33.9 bits (74), Expect = 0.023
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = +3

Query: 258 ASYDADGAWPVMLDEFVEWLR 320
           ++YD +GAWP ++DEFV + R
Sbjct: 222 SNYDFEGAWPTLIDEFVSYYR 242



 Score = 31.9 bits (69), Expect = 0.095
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +2

Query: 23  NDPHIFKAIYRYSYDFARDKEQRSLDTEVAGALLGVLL 136
           +D  + KAIY Y+Y  A DK +++L T +A     +LL
Sbjct: 139 SDASLQKAIYIYTYPLACDKGKKTLSTSIAIEFFQILL 176


>SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 370

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = +2

Query: 320 GERLINAPGQLRLRGPSTLTSSAHLYLQVLMPSQTAEFIYKRGKLYDTRS 469
           GE     P    LRGP+T+  + +L L+       A   Y  G  YD+ S
Sbjct: 311 GEGPCAPPSYAELRGPNTIADARNLQLEY---DHIASHEYGSGDTYDSDS 357


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,324,818
Number of Sequences: 5004
Number of extensions: 40610
Number of successful extensions: 110
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)