Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00914
         (719 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23153| Best HMM Match : No HMM Matches (HMM E-Value=.)              49   4e-06
SB_21037| Best HMM Match : No HMM Matches (HMM E-Value=.)              45   7e-05
SB_44668| Best HMM Match : 7tm_1 (HMM E-Value=6.1e-05)                 30   1.6  
SB_46597| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_2716| Best HMM Match : PD40 (HMM E-Value=0.00088)                   28   6.6  
SB_7505| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.8  
SB_43413| Best HMM Match : Extensin_2 (HMM E-Value=4.3)                28   8.8  
SB_10445| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  

>SB_23153| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 192

 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 18/27 (66%), Positives = 23/27 (85%)
 Frame = +3

Query: 255 LASYDADGAWPVMLDEFVEWLRANDSS 335
           L++YD DGAWPV++DEFVEW R N +S
Sbjct: 161 LSNYDEDGAWPVLMDEFVEWYRTNHTS 187



 Score = 44.8 bits (101), Expect = 7e-05
 Identities = 15/20 (75%), Positives = 20/20 (100%)
 Frame = +1

Query: 190 YRVVNRDQWCNILEFSRTVD 249
           Y+V+NRDQWCN+LEFSRT++
Sbjct: 139 YKVINRDQWCNVLEFSRTIE 158


>SB_21037| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 175

 Score = 44.8 bits (101), Expect = 7e-05
 Identities = 15/20 (75%), Positives = 20/20 (100%)
 Frame = +1

Query: 190 YRVVNRDQWCNILEFSRTVD 249
           Y+V+NRDQWCN+LEFSRT++
Sbjct: 4   YKVINRDQWCNVLEFSRTIE 23


>SB_44668| Best HMM Match : 7tm_1 (HMM E-Value=6.1e-05)
          Length = 1604

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 19/63 (30%), Positives = 28/63 (44%)
 Frame = -1

Query: 593  FSKIYFSISRPIITYAPTNSAIVPSPWCYRAFILYSPDRKLVTECHIIFRVYK*IQQFDW 414
            F    +  + P++ Y  T  A   S W +  + L SP   + T+ H + R      QFD 
Sbjct: 1518 FQWCLYRFTIPVVFYRFTILARGASTWRWTGYALVSPRESIATDIHRVHRCIGYCPQFD- 1576

Query: 413  ALI 405
            ALI
Sbjct: 1577 ALI 1579


>SB_46597| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 285

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 261 SYDADGAWPVMLDEFVEWLRANDSSMPP 344
           +YD   AWP + D+FVE+ R   +   P
Sbjct: 245 NYDDSEAWPSLFDDFVEYERERSTESCP 272


>SB_2716| Best HMM Match : PD40 (HMM E-Value=0.00088)
          Length = 248

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = -1

Query: 602 SNSFSKIYFSISRPIITYAPTNSAIVPSPWCYRAFILYSPDRKLV 468
           S S  KI++S S   I Y+P+   I+ SP      I+YSP  K +
Sbjct: 133 SPSGEKIFYSPSGEKIVYSPSGEKIIYSP--SGEIIVYSPSGKKI 175



 Score = 27.9 bits (59), Expect = 8.8
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = -1

Query: 602 SNSFSKIYFSISRPIITYAPTNSAIVPSPWCYRAFILYSPDRKLV 468
           S S  KI++S S   I Y+P+   IV SP   +  I+YSP  +++
Sbjct: 124 SPSGEKIFYSPSGEKIFYSPSGEKIVYSPSGEK--IIYSPSGEII 166


>SB_7505| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 584

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = -1

Query: 581 YFSISRPIITYAPTNSAIVPSPWCY--RAFILYSP 483
           +F +SRP++ + P N    P+ W Y  R  +L  P
Sbjct: 234 WFYMSRPMVLHVPHNGFTCPAQWFYMSRPMVLNVP 268


>SB_43413| Best HMM Match : Extensin_2 (HMM E-Value=4.3)
          Length = 529

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 626 KQLTCCALCFCDVRELYVS*IAHECEIPK 712
           + L C A C  + R+LY+  I  E  +PK
Sbjct: 329 RDLVCKAFCISNTRQLYLEKIVKEKHLPK 357


>SB_10445| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 149

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 4/79 (5%)
 Frame = +1

Query: 199 VNRDQWCNILEFS----RTVDAHSPPTTPTEPGQLC*TNLWNG*GRTTHQCPRPAETARP 366
           VNRD+ C I   S    R  D H    + T+   L  T   +  G+ TH C   A    P
Sbjct: 65  VNRDEICTISVLSGLQARPFDVHQMRISLTQTSSLDRTEDRSQTGKWTHNCVSSAYIIAP 124

Query: 367 LHSNQLRSSLSAGINAQSN 423
               +  SS+ A  N ++N
Sbjct: 125 RPCARTTSSIGAK-NKENN 142


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,478,631
Number of Sequences: 59808
Number of extensions: 312223
Number of successful extensions: 674
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)