Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00914
         (719 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL024499-2|CAB54260.2|  242|Caenorhabditis elegans Hypothetical ...    38   0.005
AL024499-1|CAB54261.2|  295|Caenorhabditis elegans Hypothetical ...    38   0.005
Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical pr...    28   5.8  

>AL024499-2|CAB54260.2|  242|Caenorhabditis elegans Hypothetical
           protein H38K22.2b protein.
          Length = 242

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 13/24 (54%), Positives = 20/24 (83%)
 Frame = +3

Query: 255 LASYDADGAWPVMLDEFVEWLRAN 326
           L+ YD +GAWPV++D+FV++ R N
Sbjct: 198 LSDYDDEGAWPVLIDQFVDYCREN 221


>AL024499-1|CAB54261.2|  295|Caenorhabditis elegans Hypothetical
           protein H38K22.2a protein.
          Length = 295

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 13/24 (54%), Positives = 20/24 (83%)
 Frame = +3

Query: 255 LASYDADGAWPVMLDEFVEWLRAN 326
           L+ YD +GAWPV++D+FV++ R N
Sbjct: 251 LSDYDDEGAWPVLIDQFVDYCREN 274


>Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical protein
            T25C12.3 protein.
          Length = 2103

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -1

Query: 641  STSAVFQLLHWKQSNSFSKIYFSISRPIIT-YAPT 540
            +T A+FQ++ + Q N+F+     +S+  +T Y PT
Sbjct: 1644 NTDALFQIISYSQGNTFTMNAVDLSKNFLTQYVPT 1678


>Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical protein
            T25C12.3 protein.
          Length = 2103

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -1

Query: 641  STSAVFQLLHWKQSNSFSKIYFSISRPIIT-YAPT 540
            +T A+FQ++ + Q N+F+     +S+  +T Y PT
Sbjct: 1644 NTDALFQIISYSQGNTFTMNAVDLSKNFLTQYVPT 1678


>Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical protein
            T25C12.3 protein.
          Length = 2103

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -1

Query: 641  STSAVFQLLHWKQSNSFSKIYFSISRPIIT-YAPT 540
            +T A+FQ++ + Q N+F+     +S+  +T Y PT
Sbjct: 1644 NTDALFQIISYSQGNTFTMNAVDLSKNFLTQYVPT 1678


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,935,287
Number of Sequences: 27780
Number of extensions: 236064
Number of successful extensions: 629
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)