Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00914
         (719 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   2.9  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   8.9  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   8.9  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   8.9  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
 Frame = -1

Query: 701 HIHVQFKIRTTRGRHKNTTHSTSAVFQLLHWKQSNSFSKIYFS-ISRPIITYAPTNSAIV 525
           H H    +  T G   +  H  +   Q LH++Q  + S+ Y S ++    + A   +   
Sbjct: 336 HQHGNHTMGPTMGPPHHHHHHQTQSLQHLHYRQPPTLSESYSSYVNSMYASGAQFATPCT 395

Query: 524 PSP 516
           PSP
Sbjct: 396 PSP 398


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -1

Query: 698 IHVQFKIRTTRGRHKNTTHSTSAVFQLLHW 609
           I + F +R   G H   T+  SA+  ++ W
Sbjct: 203 IQIVFNLRRRLGYHLFHTYIPSALIVVMSW 232


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -3

Query: 93  ERCSLSLAKSYE 58
           +RC LSL K+YE
Sbjct: 436 QRCLLSLEKTYE 447


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -3

Query: 93  ERCSLSLAKSYE 58
           +RC LSL K+YE
Sbjct: 474 QRCLLSLEKTYE 485


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,683
Number of Sequences: 438
Number of extensions: 2702
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)