Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00914
         (719 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g12760.1 68416.m01593 expressed protein similar to RP42 prote...    40   0.002
At3g28970.1 68416.m03621 expressed protein contains Pfam domain ...    36   0.036
At1g15860.1 68414.m01903 expressed protein                             32   0.33 
At1g04730.1 68414.m00469 AAA-type ATPase family protein contains...    30   1.3  
At2g39580.1 68415.m04855 expressed protein                             29   4.1  

>At3g12760.1 68416.m01593 expressed protein similar to RP42 protein
           [Homo sapiens] GI:9896486; contains Pfam profile
           PF00627: UBA/TS-N domain, PF03556: Domain of unknown
           function (DUF298)
          Length = 250

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 14/21 (66%), Positives = 20/21 (95%)
 Frame = +3

Query: 255 LASYDADGAWPVMLDEFVEWL 317
           L++YDA+GAWP ++DEFVE+L
Sbjct: 222 LSNYDAEGAWPYLIDEFVEYL 242



 Score = 27.9 bits (59), Expect = 7.2
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 193 RVVNRDQWCNILEFSRTVD 249
           + +++D W  +LEFSR VD
Sbjct: 201 KAISKDTWAQLLEFSRMVD 219


>At3g28970.1 68416.m03621 expressed protein contains Pfam domain
           PF03556: Domain of unknown function (DUF298)
          Length = 295

 Score = 35.5 bits (78), Expect = 0.036
 Identities = 12/19 (63%), Positives = 17/19 (89%)
 Frame = +3

Query: 255 LASYDADGAWPVMLDEFVE 311
           L  YD++GAWPV++D+FVE
Sbjct: 159 LEGYDSEGAWPVLIDDFVE 177


>At1g15860.1 68414.m01903 expressed protein
          Length = 225

 Score = 32.3 bits (70), Expect = 0.33
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = +3

Query: 255 LASYDADGAWPVMLDEFVEWLR 320
           +  Y+ + AWP++LD FVEW++
Sbjct: 200 MGDYNPELAWPLILDNFVEWIQ 221


>At1g04730.1 68414.m00469 AAA-type ATPase family protein contains
           Pfam domain, PF00004: ATPase, AAA family ('A'TPases
           'A'ssociated with diverse cellular 'A'ctivities)
          Length = 954

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 18/68 (26%), Positives = 32/68 (47%)
 Frame = -1

Query: 662 RHKNTTHSTSAVFQLLHWKQSNSFSKIYFSISRPIITYAPTNSAIVPSPWCYRAFILYSP 483
           RH  T+H   +       KQ N +SK  F  S+     + TN+A +   W  ++ +   P
Sbjct: 285 RHSTTSHHQKSDSAFTRKKQFNRWSKESFGYSKN-AEVSNTNTADINDLWNKKSKLTGPP 343

Query: 482 DRKLVTEC 459
           ++K++  C
Sbjct: 344 EQKILLLC 351


>At2g39580.1 68415.m04855 expressed protein
          Length = 1567

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 349 AETARPLHSNQLRSSLSAGINAQSNC 426
           A  A P+++  +R SL  G+NA S+C
Sbjct: 288 ASAAAPMNAPDIRKSLLPGVNANSSC 313


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,997,292
Number of Sequences: 28952
Number of extensions: 211966
Number of successful extensions: 536
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)