Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00913
(722 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0) 160 9e-40
SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.) 151 6e-37
SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.) 137 1e-32
SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.) 136 2e-32
SB_51693| Best HMM Match : Pro_isomerase (HMM E-Value=3.5e-19) 98 7e-21
SB_25950| Best HMM Match : Pro_isomerase (HMM E-Value=2.5e-24) 88 8e-18
SB_24676| Best HMM Match : No HMM Matches (HMM E-Value=.) 85 4e-17
SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23) 82 4e-16
SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23) 81 9e-16
SB_3070| Best HMM Match : Pro_isomerase (HMM E-Value=2.3e-05) 77 1e-14
SB_21081| Best HMM Match : Pro_isomerase (HMM E-Value=0.11) 52 4e-07
SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 7e-04
SB_23239| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_42464| Best HMM Match : Pro_isomerase (HMM E-Value=3.9e-06) 37 0.014
SB_6440| Best HMM Match : DUF638 (HMM E-Value=6.2) 32 0.54
SB_24760| Best HMM Match : PT (HMM E-Value=0.17) 31 0.72
SB_6387| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.72
SB_19689| Best HMM Match : VWA (HMM E-Value=0.0035) 30 1.7
SB_3760| Best HMM Match : SVA (HMM E-Value=0.19) 30 1.7
SB_32934| Best HMM Match : K_tetra (HMM E-Value=7.79963e-42) 30 2.2
SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22) 30 2.2
SB_19447| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23) 28 6.7
SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_14859| Best HMM Match : SEA (HMM E-Value=0.01) 28 8.8
>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
Length = 298
Score = 160 bits (389), Expect = 9e-40
Identities = 71/103 (68%), Positives = 83/103 (80%)
Frame = +2
Query: 215 QGLHFPSCHPQFHVQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTN 394
+G F PQF QGGDFT HNGTGGKSIYG KFEDENF LKHTG GVLSMAN+G +TN
Sbjct: 182 KGSSFHRIIPQFMCQGGDFTKHNGTGGKSIYGAKFEDENFVLKHTGAGVLSMANSGPNTN 241
Query: 395 GSQFFITTVKTSWLDGRHVVFGNVVEGMEVVKQIETFGASLGR 523
GSQFF+TT KT WLDG+HVVFGNV+EG +VV+++E G+ G+
Sbjct: 242 GSQFFLTTEKTDWLDGKHVVFGNVIEGFDVVRKMEAVGSQSGK 284
Score = 101 bits (243), Expect = 4e-22
Identities = 43/62 (69%), Positives = 50/62 (80%)
Frame = +3
Query: 81 PRVFFDVTVDDAPLGKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMCK 260
PRVFFD+T+ + G+IV+ELRSDV P T ENFR LCT EKGFGYKGS FHR+IP FMC+
Sbjct: 137 PRVFFDITIGERSAGRIVMELRSDVVPMTAENFRCLCTHEKGFGYKGSSFHRIIPQFMCQ 196
Query: 261 EG 266
G
Sbjct: 197 GG 198
Score = 31.1 bits (67), Expect = 0.95
Identities = 11/18 (61%), Positives = 16/18 (88%)
Frame = +1
Query: 511 QSGKTSKRIVIKDCGQIA 564
QSGK SK++VI DCG+++
Sbjct: 281 QSGKASKKVVIDDCGELS 298
>SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 235
Score = 151 bits (366), Expect = 6e-37
Identities = 69/103 (66%), Positives = 80/103 (77%)
Frame = +2
Query: 215 QGLHFPSCHPQFHVQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTN 394
+G F P F QGGDFT +GTGGKSIYG KF DENF LKHTGPG+LSMANAG TN
Sbjct: 48 KGSSFHRVIPGFMCQGGDFTRGDGTGGKSIYGAKFADENFNLKHTGPGILSMANAGPGTN 107
Query: 395 GSQFFITTVKTSWLDGRHVVFGNVVEGMEVVKQIETFGASLGR 523
GSQFF+ T KTSWLDG+HVVFG+V +GM+VVK+IE G+ G+
Sbjct: 108 GSQFFLCTAKTSWLDGKHVVFGSVKDGMDVVKKIEKVGSDSGK 150
Score = 101 bits (243), Expect = 4e-22
Identities = 43/59 (72%), Positives = 49/59 (83%)
Frame = +3
Query: 90 FFDVTVDDAPLGKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMCKEG 266
+FD+ + AP G+IV+ELR DV PKT ENFRALCTGEKGFGYKGS FHRVIP FMC+ G
Sbjct: 6 YFDIEIGGAPAGRIVMELRDDVVPKTAENFRALCTGEKGFGYKGSSFHRVIPGFMCQGG 64
>SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 201
Score = 137 bits (331), Expect = 1e-32
Identities = 60/84 (71%), Positives = 70/84 (83%)
Frame = +2
Query: 248 FHVQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQFFITTVKT 427
F +QGGDFTN +GTGG SIYG F+DENF LKH GPG L MANAG +TNGSQF+ITT+KT
Sbjct: 82 FMIQGGDFTNKDGTGGYSIYGKYFDDENFNLKHYGPGWLCMANAGKNTNGSQFYITTIKT 141
Query: 428 SWLDGRHVVFGNVVEGMEVVKQIE 499
SWLDG H FG V+EGM+VV++IE
Sbjct: 142 SWLDGSHTCFGKVLEGMDVVRRIE 165
Score = 70.1 bits (164), Expect = 2e-12
Identities = 31/61 (50%), Positives = 41/61 (67%)
Frame = +3
Query: 84 RVFFDVTVDDAPLGKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMCKE 263
+V+ DV++ P G++++ L D PKT NF AL E+GFGYK SIFHRVI NFM +
Sbjct: 27 KVWMDVSIGGQPAGRVILGLFGDTAPKTVANFVALADKEQGFGYKDSIFHRVIKNFMIQG 86
Query: 264 G 266
G
Sbjct: 87 G 87
>SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 253
Score = 136 bits (329), Expect = 2e-32
Identities = 62/79 (78%), Positives = 67/79 (84%)
Frame = +2
Query: 248 FHVQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQFFITTVKT 427
F +QGGDFT +GTGGKSIYG KF DENF L+H G G LSMANAG DTNGSQFFITTVKT
Sbjct: 101 FMIQGGDFTKGDGTGGKSIYGQKFADENFKLQHYGAGWLSMANAGKDTNGSQFFITTVKT 160
Query: 428 SWLDGRHVVFGNVVEGMEV 484
WLDGRHVVFG V++GMEV
Sbjct: 161 PWLDGRHVVFGKVLKGMEV 179
Score = 40.3 bits (90), Expect = 0.002
Identities = 30/79 (37%), Positives = 41/79 (51%), Gaps = 18/79 (22%)
Frame = +3
Query: 84 RVFFDVTVDDAPLGKI------VIELRSDVTPKTCE-----NFRAL-----CT--GEKGF 209
+VFFD+T+ G+I +I+ + + E NFR CT +KGF
Sbjct: 28 KVFFDITIGGEKAGRIEIGLFVIIKTYYLLATRLVESLIGTNFRYFDTYYCCTIESQKGF 87
Query: 210 GYKGSIFHRVIPNFMCKEG 266
GYK SIFHRVI +FM + G
Sbjct: 88 GYKNSIFHRVIQDFMIQGG 106
>SB_51693| Best HMM Match : Pro_isomerase (HMM E-Value=3.5e-19)
Length = 99
Score = 97.9 bits (233), Expect = 7e-21
Identities = 45/73 (61%), Positives = 57/73 (78%), Gaps = 1/73 (1%)
Frame = +2
Query: 281 NGTGGKSIYGNKFEDE-NFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVF 457
+GTGG+SI+G +FEDE + L+H P +SMANAG +TNGSQFFIT V T WLD +H VF
Sbjct: 2 DGTGGESIWGGEFEDEFHRNLRHDRPYTVSMANAGPNTNGSQFFITVVPTPWLDNKHTVF 61
Query: 458 GNVVEGMEVVKQI 496
G VV+GM+V +QI
Sbjct: 62 GRVVKGMDVAQQI 74
>SB_25950| Best HMM Match : Pro_isomerase (HMM E-Value=2.5e-24)
Length = 145
Score = 87.8 bits (208), Expect = 8e-18
Identities = 39/83 (46%), Positives = 55/83 (66%)
Frame = +2
Query: 251 HVQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTS 430
H++GG G GG+S+YG FEDE+F++ H GV+ MAN G TNGSQF+IT
Sbjct: 40 HIEGG-----RGIGGESVYGPLFEDEDFSVAHNRRGVVGMANKGRHTNGSQFYITLQPAP 94
Query: 431 WLDGRHVVFGNVVEGMEVVKQIE 499
W+D ++V FG V+EG+ V+ +E
Sbjct: 95 WMDTKYVAFGQVIEGLNVLDVLE 117
>SB_24676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 76
Score = 85.4 bits (202), Expect = 4e-17
Identities = 37/55 (67%), Positives = 45/55 (81%)
Frame = +2
Query: 368 MANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEGMEVVKQIETFGASLGRPLR 532
MANAG DTNGSQFFITTVKTSWLDG+HVVFG V+EGM+VV+++E P++
Sbjct: 1 MANAGKDTNGSQFFITTVKTSWLDGKHVVFGKVLEGMDVVRKLENVNVKGSTPVK 55
>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
Length = 741
Score = 82.2 bits (194), Expect = 4e-16
Identities = 36/53 (67%), Positives = 46/53 (86%)
Frame = +2
Query: 341 KHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEGMEVVKQIE 499
+H PG+LSMAN+G +TNGSQFFITTV T LDGRHVVFG V++GM+VV+++E
Sbjct: 188 EHDKPGLLSMANSGPNTNGSQFFITTVPTPHLDGRHVVFGKVLKGMDVVRELE 240
>SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23)
Length = 378
Score = 81.0 bits (191), Expect = 9e-16
Identities = 42/74 (56%), Positives = 51/74 (68%)
Frame = +2
Query: 281 NGTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFG 460
NGTGG+SIYG F DE F KH P +LSMAN G +TNGSQFFI HVVFG
Sbjct: 25 NGTGGESIYGGTFGDECFEFKHERPMLLSMANRGPNTNGSQFFII----------HVVFG 74
Query: 461 NVVEGMEVVKQIET 502
+V++G E+V+QIE+
Sbjct: 75 HVIQGEELVRQIES 88
>SB_3070| Best HMM Match : Pro_isomerase (HMM E-Value=2.3e-05)
Length = 49
Score = 77.4 bits (182), Expect = 1e-14
Identities = 33/46 (71%), Positives = 41/46 (89%)
Frame = +2
Query: 359 VLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEGMEVVKQI 496
+LSMANAG TNGSQFF+ T KTSWLDG+HVVFG+V +GM+VVK++
Sbjct: 2 ILSMANAGPGTNGSQFFLCTAKTSWLDGKHVVFGSVKDGMDVVKKM 47
>SB_21081| Best HMM Match : Pro_isomerase (HMM E-Value=0.11)
Length = 48
Score = 52.4 bits (120), Expect = 4e-07
Identities = 26/46 (56%), Positives = 30/46 (65%), Gaps = 8/46 (17%)
Frame = +3
Query: 123 GKIVIELRSDVTPKTCENFRALCTGEKGFG--------YKGSIFHR 236
G+++ EL +D PKT ENFRALCTGEKG G YKG FHR
Sbjct: 2 GRVLFELFADKVPKTAENFRALCTGEKGIGPSTGKPLHYKGCPFHR 47
>SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1651
Score = 41.5 bits (93), Expect = 7e-04
Identities = 19/39 (48%), Positives = 25/39 (64%)
Frame = +2
Query: 344 HTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFG 460
H G +SMAN G ++NGSQFFI K LD ++ +FG
Sbjct: 301 HNARGTVSMANNGPNSNGSQFFICYGKQPHLDMKYTMFG 339
>SB_23239| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 251
Score = 40.3 bits (90), Expect = 0.002
Identities = 23/49 (46%), Positives = 30/49 (61%)
Frame = +3
Query: 120 LGKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMCKEG 266
LG+I IEL +D P + NF A + G+ Y G+ FHRVIP FM + G
Sbjct: 32 LGEIEIELDADKAPISTANFLAYV--DSGY-YAGTQFHRVIPGFMVQGG 77
Score = 36.3 bits (80), Expect = 0.025
Identities = 33/99 (33%), Positives = 45/99 (45%), Gaps = 6/99 (6%)
Frame = +2
Query: 218 GLHFPSCHPQFHVQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGA-DTN 394
G F P F VQGG F + + ++E H G L+MA D+
Sbjct: 62 GTQFHRVIPGFMVQGGGF---DADMQQKDTQAPIKNEADNGLHNVRGTLAMARTQVRDSA 118
Query: 395 GSQFFITTVKTSWLDGR-----HVVFGNVVEGMEVVKQI 496
SQFFI ++LD + VFG VV+GM+VV +I
Sbjct: 119 TSQFFINHKDNAFLDHGSRDFGYAVFGKVVKGMDVVDKI 157
>SB_42464| Best HMM Match : Pro_isomerase (HMM E-Value=3.9e-06)
Length = 454
Score = 37.1 bits (82), Expect = 0.014
Identities = 19/41 (46%), Positives = 25/41 (60%)
Frame = +3
Query: 120 LGKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVI 242
+G I IEL TPK C NF LC +G+ Y +IFHR++
Sbjct: 12 VGDIDIELWGKETPKACRNFIQLCL--EGY-YDNTIFHRIV 49
>SB_6440| Best HMM Match : DUF638 (HMM E-Value=6.2)
Length = 175
Score = 31.9 bits (69), Expect = 0.54
Identities = 12/19 (63%), Positives = 18/19 (94%)
Frame = +2
Query: 446 HVVFGNVVEGMEVVKQIET 502
HVVFG+V++G E+V+QIE+
Sbjct: 3 HVVFGHVIQGEELVRQIES 21
>SB_24760| Best HMM Match : PT (HMM E-Value=0.17)
Length = 422
Score = 31.5 bits (68), Expect = 0.72
Identities = 18/46 (39%), Positives = 20/46 (43%)
Frame = -3
Query: 486 TTSMPSTTFPKTTCLPSSQEVLTVVMKNWEPLVSAPALAMERTPGP 349
TT PST P T PS+ E +T WEP P PGP
Sbjct: 34 TTGEPSTWEPMTGA-PSTWEPMTGAPSTWEPWTDGPGPYPTDGPGP 78
Score = 31.1 bits (67), Expect = 0.95
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = -3
Query: 459 PKTTCLPSSQEVLTVVMKNWEPLVSAPALAMERTPGP 349
P TT PS+ E +T WEP+ AP+ T GP
Sbjct: 32 PFTTGEPSTWEPMTGAPSTWEPMTGAPSTWEPWTDGP 68
>SB_6387| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 197
Score = 31.5 bits (68), Expect = 0.72
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = -3
Query: 489 LTTSMPSTTFPKTTCLPSSQEVLTVVMKNWEPLVSAPALAMERTPGP 349
L+ + + FP TT P + + T + EPL+ P +R P P
Sbjct: 13 LSATQLTAAFPTTTTTPVTTQTTTTDVSRTEPLIELPTAQEKRKPCP 59
>SB_19689| Best HMM Match : VWA (HMM E-Value=0.0035)
Length = 885
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = +3
Query: 114 APLGKIVIELRSDVTPKTCENFRALCTG 197
AP I+I L S V+PKT E+ R LC G
Sbjct: 569 APKIDIIIALDSGVSPKTFEDERQLCAG 596
>SB_3760| Best HMM Match : SVA (HMM E-Value=0.19)
Length = 259
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
Frame = -3
Query: 462 FPKTTCLPSSQE-----VLTVVMKNWEPLVSAPALAMERTPGP 349
FP+ + LP S E +LT++++N P ++APA + P P
Sbjct: 81 FPQPSLLPPSSESFDITLLTILLRNICPTLTAPATGWDALPAP 123
>SB_32934| Best HMM Match : K_tetra (HMM E-Value=7.79963e-42)
Length = 1207
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -1
Query: 155 DVTSQL-NNNFSQWGIVNSDVEEYSW*RHFAGISNVSNLQNHHNDNA 18
DV S L S WGI + D+E+ W + I+ L++ H D+A
Sbjct: 90 DVCSTLFQEELSYWGINDRDMEQCCWAHYKRQINTEETLKSFHLDSA 136
>SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)
Length = 3445
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Frame = -3
Query: 555 TTVFDNDSLRGLPRLAPKVSICLTTSMPSTTF-PKTTCLPSSQEVLTVVMKNWEPLVSAP 379
TT+ + + +AP ++ T +P TT P+TT P S + M + +
Sbjct: 2279 TTMAPETTATPVTTMAPDTTVAAETMVPDTTLAPETTVAPESTKAPEATMAPETTVTAET 2338
Query: 378 ALAMERTPGP 349
A E T P
Sbjct: 2339 TAAAETTVAP 2348
>SB_19447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1110
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Frame = -3
Query: 462 FPKTTCLPSSQE-----VLTVVMKNWEPLVSAPALAMERTPGP 349
FP+ LP S E +LT++++N P ++APA + P P
Sbjct: 81 FPQPPLLPPSSESFDITLLTILLRNICPTLTAPATGWDALPAP 123
>SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 253
Score = 29.1 bits (62), Expect = 3.8
Identities = 18/62 (29%), Positives = 27/62 (43%)
Frame = -3
Query: 507 PKVSICLTTSMPSTTFPKTTCLPSSQEVLTVVMKNWEPLVSAPALAMERTPGPVCLRVKF 328
P+ TTS PST+ P+T ++ T N AP+ + RT + LR
Sbjct: 87 PRTGSTTTTSAPSTSTPRTGSTTTTSAPSTSTTSN--STTRAPSTSTPRTGSTITLRTST 144
Query: 327 SS 322
+S
Sbjct: 145 TS 146
>SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2014
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = -2
Query: 193 VHRARKFSHVLGV--TSLLSSITIFPSGASSTVTSKNTRGRDILPV 62
+ + KF+H+ G+ TS T+F +T T TR RD++ +
Sbjct: 168 IQQLHKFTHIHGMLSTSSRGRYTLFRGQYDTTATQIYTRSRDVIDI 213
>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4072
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -3
Query: 555 TTVFDNDSLRGLPRLAPKVSICLTTSMP-STTFPKTTCLPSSQEV 424
T+ D ++RG + ++ TT +P +TT P+TT +P + V
Sbjct: 2205 TSASDTTAVRGTTAVPESTAVPGTTVVPETTTLPETTAVPETTAV 2249
>SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23)
Length = 2123
Score = 28.3 bits (60), Expect = 6.7
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = -3
Query: 519 PRLAPKVSICLTTSMPSTTFPKTTCLPSSQEVLTVVMKNWEPLVSAPALAMERTPGP 349
P +P + TT+ P TT P+TT P + T + P + P +T P
Sbjct: 1767 PPHSPPTTTTTTTTTPETTAPRTT-TPETTTPETTTPRTTTPETTKPRTTTPKTTTP 1822
>SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5659
Score = 28.3 bits (60), Expect = 6.7
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Frame = -3
Query: 555 TTVFDNDSLRGLPRLAPKVSICL-TTSMPSTTFPKTTCLPSSQEVLTV-VMKNWEPLVSA 382
TT+ ++ + P+ ++ L TT+ P TT P T + S + +V M + S
Sbjct: 1611 TTMAPESTVATGTTIVPETTLALETTTAPETTLPPETTMASESTLASVTTMAPESTVASV 1670
Query: 381 PALAMERTPGP 349
+A E T P
Sbjct: 1671 TTMAPESTLAP 1681
>SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2323
Score = 28.3 bits (60), Expect = 6.7
Identities = 22/73 (30%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
Frame = +2
Query: 230 PSCHPQFHVQGGDFTNHNGTGGKSIYGNK-FEDENFTLKHTGPGVLSMANAGADTNGSQF 406
P+ P +G T GTGG S N + T PGV AN G S +
Sbjct: 303 PATTPTSGTEGAG-TGGPGTGGPSGSSNPPTTGTPASASPTAPGVKGGANGGDCFRDSCY 361
Query: 407 FITTVKTSWLDGR 445
++ TSW + R
Sbjct: 362 IFSSEGTSWTENR 374
>SB_14859| Best HMM Match : SEA (HMM E-Value=0.01)
Length = 1776
Score = 27.9 bits (59), Expect = 8.8
Identities = 18/69 (26%), Positives = 27/69 (39%)
Frame = -3
Query: 555 TTVFDNDSLRGLPRLAPKVSICLTTSMPSTTFPKTTCLPSSQEVLTVVMKNWEPLVSAPA 376
TT + + +P P TT+ P TT P+TT P + T + P+ + P
Sbjct: 140 TTATSTSTTKYIPP-PPSPPTTTTTTTPETTAPRTT-TPETTTPETTTPRTTTPVTTTPR 197
Query: 375 LAMERTPGP 349
T P
Sbjct: 198 TTTPETTTP 206
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,908,755
Number of Sequences: 59808
Number of extensions: 547486
Number of successful extensions: 1720
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1715
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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