Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00912
         (709 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    29   0.86 
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    29   0.86 
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ...    28   1.5  
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    27   2.0  
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    27   2.0  
SPCC1795.03 |gms1||UDP-galactose transporter Gms1|Schizosaccharo...    27   3.5  
SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces pom...    27   3.5  
SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces ...    26   6.1  

>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1260

 Score = 28.7 bits (61), Expect = 0.86
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 268  PLEVTAPPSFIVVPTNQTAIIGDNV 342
            P+E+  PPS  + P+   A++G NV
Sbjct: 1048 PIEIRIPPSCFLNPSETAAVVGGNV 1072


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1375

 Score = 28.7 bits (61), Expect = 0.86
 Identities = 15/68 (22%), Positives = 33/68 (48%)
 Frame = -2

Query: 705  HLLRFLNHLSSNQSKQVAHFRFRKAFALKFL*MHPYLLASKRYEEE*FLPVRVLEQQMLQ 526
            HLLR L    SN  +++AHF  R+ +      ++ +++      +   +   +++Q  + 
Sbjct: 1049 HLLRELEEEKSNTQRKIAHFESRRRYLTN---LYEHIVLKAESHQICIICRDIIKQGFIT 1105

Query: 525  SYLHHFCS 502
            +  H +CS
Sbjct: 1106 TCGHLYCS 1113


>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 238 KHTWKKSASVPLEVTAPPSFIVVPTNQTAIIGDNVW 345
           +H+   + S P  +T PPSF V  TNQ   I D ++
Sbjct: 419 EHSLNGTKSAP--ITPPPSFAVPLTNQLRSIDDKIY 452


>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -2

Query: 165 KIMRSFNNILSPLKYQATCGLGNPVAVQSNITEVSLIL 52
           ++ +  NNILSP  +Q+   LG+P     NI    LIL
Sbjct: 720 RLQKGKNNILSPPSFQSPTALGDP---GDNIASSPLIL 754


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -2

Query: 432 HNIFSYR*YYRISIPFNRRFWSSLRFTRKP 343
           ++I ++  Y ++ +PFN  F SSL+ T+ P
Sbjct: 374 NSIIAFCNYNQVKLPFNVDFGSSLKVTKHP 403


>SPCC1795.03 |gms1||UDP-galactose transporter
           Gms1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 353

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +2

Query: 92  TGFPKPHVAWYFNGERMLLNERIILQHNGSILIKNVQNSDAGVYTC 229
           TGF    VA   +G   +  E+++   N S+ ++NVQ S   ++ C
Sbjct: 185 TGFSAVLVACLISGLAGVYFEKVLKDTNPSLWVRNVQLSFFSLFPC 230


>SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 188

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +1

Query: 325 IIGDNVWFTCKA-KGTPKPSIKWYRNTV 405
           ++ ++ W   KA  G P P +KW+ N+V
Sbjct: 63  VLVEDTWLGYKAMNGLPGPYVKWFLNSV 90


>SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 429

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -3

Query: 596 FWLQNDTRRNDFYLFEC*NSRCFNHTSIISALQ*YIASS 480
           FW+ ND   NDFY  E     C +    ++ +  Y A S
Sbjct: 350 FWINNDFNPNDFY--EIIRDVCQDMVESVNLIDQYTAKS 386


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,110,871
Number of Sequences: 5004
Number of extensions: 66261
Number of successful extensions: 148
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)