Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00912
         (709 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0697 - 5743089-5744902,5745091-5745751,5747918-5748910           28   6.3  
08_01_1035 + 10501861-10502044,10502145-10502542                       28   6.3  
12_02_0587 + 20835741-20836115,20836183-20836218,20836409-208366...    28   8.4  
12_01_0179 - 1319291-1319332,1319884-1320579,1322759-1323207,132...    28   8.4  
02_02_0524 + 11179224-11179469,11179543-11181465                       28   8.4  

>11_01_0697 - 5743089-5744902,5745091-5745751,5747918-5748910
          Length = 1155

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/49 (24%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +3

Query: 561 EIIPPRIVLKP-EDMDAFKETSVQMPCEIESVPPASIDWRKDGSRIVED 704
           ++ PP++ +   E++ +  E  +    E + +    ++W KD  R VED
Sbjct: 751 DVNPPKLEISSLENVRSINEVQIIKLLEKQRIEELKLEWAKDAVRFVED 799


>08_01_1035 + 10501861-10502044,10502145-10502542
          Length = 193

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 24/84 (28%), Positives = 34/84 (40%)
 Frame = +1

Query: 250 KKSASVPLEVTAPPSFIVVPTNQTAIIGDNVWFTCKAKGTPKPSIKWYRNTVILPITENI 429
           K  A+V     A  + + V   +  ++G N     K    P    +W   T    I +N+
Sbjct: 3   KVLATVLCAALAFAAAVAVANARDLVVGGNNGGGWKVPAQPDALNRWAEATRF-HIGDNL 61

Query: 430 VLSDDNQNLTLLEVTRDDDAIYHC 501
           V   D     +LEVTRDD    HC
Sbjct: 62  VFKFDGAADAVLEVTRDD--YNHC 83


>12_02_0587 +
           20835741-20836115,20836183-20836218,20836409-20836617,
           20837402-20837498,20837977-20838046,20838224-20838281,
           20838914-20839734,20839780-20840121,20840224-20841227
          Length = 1003

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 259 ASVPLEVTAPPSFIVVPTNQTAIIGDNVWFTC 354
           ASVP ++ +P S I V  N   ++  N  F+C
Sbjct: 299 ASVPQDILSPGSSIPVEDNSNMLVSPNGLFSC 330


>12_01_0179 - 1319291-1319332,1319884-1320579,1322759-1323207,
            1323291-1324903,1324991-1325077,1326983-1327251
          Length = 1051

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 6/75 (8%)
 Frame = -3

Query: 419  VIGNITV-FLYH-LIEGFGVPFALHVNQTLSPIIAV*FVGTTIKDGGAVTSNGTDADFFH 246
            V+ NIT  F++H  ++G  +P A  +   L P++     G  I       SNG D   + 
Sbjct: 948  VLDNITGRFVHHDSMDGANLPAATRLADALRPLLPAPPQGPPISGPTPQQSNGYDCGVYL 1007

Query: 245  VCFQLDMC----KHP 213
            +   L +C    KHP
Sbjct: 1008 LAVALAICRWWKKHP 1022


>02_02_0524 + 11179224-11179469,11179543-11181465
          Length = 722

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = +1

Query: 352 CKAKGTPKPSIKWYRNTVILPITENIVLSDDNQNLTLLEVTRDDDAIY 495
           C A+G P      + +  + PI  N   SD  +N+ + + + D + IY
Sbjct: 526 CDAEGNPVGQTDGHYDAAVSPIDPNEDSSDVRENMIMPDGSSDGECIY 573


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,965,831
Number of Sequences: 37544
Number of extensions: 413233
Number of successful extensions: 956
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)