Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00912
         (709 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07070.1 68415.m00807 AT hook motif-containing protein contai...    30   1.7  
At1g36160.1 68414.m04495 acetyl-CoA carboxylase 1 (ACC1) nearly ...    28   7.0  
At1g68190.1 68414.m07790 zinc finger (B-box type) family protein       27   9.2  

>At2g07070.1 68415.m00807 AT hook motif-containing protein contains
           Pfam profile PF02178: AT hook motif
          Length = 501

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -2

Query: 177 PLCCKIMRSFNNILSPLKYQATCGLGNPVAVQ 82
           P   K    F+N L+P+     CGLGNP+ VQ
Sbjct: 336 PAAQKNKVDFHNPLAPIVSWNCCGLGNPMTVQ 367


>At1g36160.1 68414.m04495 acetyl-CoA carboxylase 1 (ACC1) nearly
           identical to acetyl-CoA carboxylase 1 (ACC1)
           [Arabidopsis thaliana] GI:11869927
          Length = 2247

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = +1

Query: 295 FIVVPTNQTAIIGDNVWFTCKAKGTPKPSIKWYRNTVILPITENIV 432
           F+  P +  A +GD +  +  A+    P++ W  + V +P   N+V
Sbjct: 148 FLGPPASSMAALGDKIGSSLIAQAADVPTLPWSGSHVKIPPNSNLV 193


>At1g68190.1 68414.m07790 zinc finger (B-box type) family protein
          Length = 356

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/54 (22%), Positives = 30/54 (55%)
 Frame = +1

Query: 313 NQTAIIGDNVWFTCKAKGTPKPSIKWYRNTVILPITENIVLSDDNQNLTLLEVT 474
           + ++ +GD+ W  CK+       + W++N   + + E+ + SDD+  +  +++T
Sbjct: 202 SSSSTLGDSFW-ECKSPYNKNNQL-WHQNIQDIGVCEDTICSDDDFQIPDIDLT 253


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,285,812
Number of Sequences: 28952
Number of extensions: 348530
Number of successful extensions: 874
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 874
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)