Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00911
(739 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c... 28 1.2
SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces p... 28 1.6
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ... 27 2.8
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 27 2.8
SPAC26H5.06 |pot1||telomere end-binding protein Pot1 |Schizosacc... 26 4.9
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc... 26 4.9
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|... 26 6.4
SPAC4D7.11 |||conserved fungal protein|Schizosaccharomyces pombe... 26 6.4
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual 26 6.4
SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces ... 26 6.4
>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 958
Score = 28.3 bits (60), Expect = 1.2
Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +1
Query: 85 GY-HRRALPPRHRASLEIAETFKTNYGKDLISEL 183
GY H A+P +H+ ++ +AETF + DL+ ++
Sbjct: 753 GYSHTLAVPGKHKQNISMAETFSPSPRHDLLRQV 786
>SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 309
Score = 27.9 bits (59), Expect = 1.6
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +3
Query: 267 DAVSGIGTDEEAIIEILCTLSNYGIRTISAFYEQLYGKSLESD 395
DA++ + +E I E T +Y IRT+S Y+ Y S D
Sbjct: 215 DAITSLWDPQELICERSITRMDYPIRTLSFSYDSRYLASGSED 257
>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 507
Score = 27.1 bits (57), Expect = 2.8
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = +2
Query: 530 QWGTDESIFNSILITRSYQQLRQIFAEYEALTGKDIEDSIK 652
QWGTD ++ ++ TR+ +Q++ F + E + ++K
Sbjct: 382 QWGTDFALIANMFPTRNRRQIKLKFKQEERRNPARVNQALK 422
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 27.1 bits (57), Expect = 2.8
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +1
Query: 241 PHFYARSSTMLSQELEPTKKPSSRSCARFPTMVSVPYPHFTNN 369
PHF SS+++ T P+ A T + +PY H+T+N
Sbjct: 124 PHFDQDSSSVIYPSPPSTYYPNMYVSAN--TFIPMPYAHYTDN 164
>SPAC26H5.06 |pot1||telomere end-binding protein Pot1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 555
Score = 26.2 bits (55), Expect = 4.9
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = -1
Query: 556 ED*FVGSPLTFTSGGQASASALAEPSSMPWFSSRLAMHNDTHNLLK 419
E+ F+ L TS + +A + EP+S+ + +H NLLK
Sbjct: 358 ENPFIAHELKQTSVNEITAHVINEPASLKLTTISTILHAPLQNLLK 403
>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 636
Score = 26.2 bits (55), Expect = 4.9
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Frame = -1
Query: 520 SGGQASASALAEPSSMPWFSSRLAMHND---THNL 425
+GG A++S+ + PSS W SR +++D TH L
Sbjct: 246 TGGAANSSSTSNPSSAKW--SRFTVYDDASHTHQL 278
>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 25.8 bits (54), Expect = 6.4
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +3
Query: 495 ADAEAWPPLVKVNGEPTNQSSTPSLSLAPISS*DRSSP 608
+D + P K G P+N PSL P S +S+P
Sbjct: 310 SDFRSIPSSPKTEGAPSNAQFRPSLPATPNGSVPQSNP 347
>SPAC4D7.11 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 281
Score = 25.8 bits (54), Expect = 6.4
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +3
Query: 492 KADAEAWPPLVKVNGEPTNQSSTPSLSLAPISS*DRSSPSTKL 620
+ D+E W LV + T ++T S++ +P+SS P++ L
Sbjct: 235 EVDSEDWKDLVWKSQYATENANTNSINNSPLSSNTTGVPNSVL 277
>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1339
Score = 25.8 bits (54), Expect = 6.4
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = +2
Query: 356 ILRTTVRQEPGIGLKRRHVG 415
++ T + +PG LK+RH+G
Sbjct: 1171 MMPTNIEHDPGCTLKKRHIG 1190
>SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 550
Score = 25.8 bits (54), Expect = 6.4
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Frame = +2
Query: 347 HIRILRTTVRQEPGIGLKR-----RHVGTLQEIVRVVVHGQSR 460
H++ ++ V QE G L R LQE+VRVV+H R
Sbjct: 325 HLQSIKAQVEQERGSRLGRLQELRNSFQQLQELVRVVLHENGR 367
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,812,070
Number of Sequences: 5004
Number of extensions: 57459
Number of successful extensions: 208
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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