Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00910
         (704 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY819656-1|AAV70656.1|   56|Tribolium castaneum elongation facto...    76   2e-16
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    24   1.4  
AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory recept...    24   1.4  
AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory recept...    24   1.4  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    23   1.8  
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    23   2.4  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        23   2.4  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    21   7.4  

>AY819656-1|AAV70656.1|   56|Tribolium castaneum elongation factor
           1-alpha protein.
          Length = 56

 Score = 76.2 bits (179), Expect = 2e-16
 Identities = 35/38 (92%), Positives = 36/38 (94%)
 Frame = +1

Query: 256 ETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPG 369
           ETGVLKPG +VVFAPANITTEVKSVEMHHEAL EAVPG
Sbjct: 19  ETGVLKPGMVVVFAPANITTEVKSVEMHHEALPEAVPG 56



 Score = 41.5 bits (93), Expect = 6e-06
 Identities = 18/19 (94%), Positives = 19/19 (100%)
 Frame = +2

Query: 203 LQDVYKIGGIGTVPVGRVK 259
           LQDVYKIGGIGTVPVGRV+
Sbjct: 1   LQDVYKIGGIGTVPVGRVE 19


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -3

Query: 357 FLESFVVHLHRFDFSSDVG 301
           FLE  + H  RF FSS VG
Sbjct: 68  FLEMTLAHHCRFKFSSSVG 86


>AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory receptor
           candidate 13 protein.
          Length = 390

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 154 IESFNEAFSVSFAFFTLH 101
           I++FN+ F  SF  FTL+
Sbjct: 271 IDAFNDIFGWSFLLFTLY 288


>AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory receptor
           candidate 12 protein.
          Length = 316

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 154 IESFNEAFSVSFAFFTLH 101
           I++FN+ F  SF  FTL+
Sbjct: 197 IDAFNDIFGWSFLLFTLY 214


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 315 SSDVGGGKDNNGTWFQHTSF 256
           ++ V GG +NNGT   H+ F
Sbjct: 182 AAQVSGGNNNNGTPGGHSGF 201


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 288 NNGTWFQHTSFTLPTGTVPIP 226
           NN    QH +F LP G +P+P
Sbjct: 229 NNPKNKQH-NFNLPPGAIPVP 248


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 247 RQSETGVLKPGTIVVFAPANITTEVKS 327
           R  ETG ++PG I    P   T EV++
Sbjct: 93  RYQETGSIRPGVIGGSKPRVATPEVEN 119


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
 Frame = -2

Query: 277 LVSTHQFHS----ADGHGTNTTDFVYVLQ 203
           L   H+++S    A+GHG NT+   Y  Q
Sbjct: 275 LAYQHEYNSFNWTANGHGHNTSSHNYYAQ 303


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,492
Number of Sequences: 336
Number of extensions: 4563
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18634795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)