Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00910
(704 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 150 9e-37
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 34 0.098
SB_25386| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.91
SB_33922| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_733| Best HMM Match : DUF789 (HMM E-Value=1.3) 29 3.7
SB_50149| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_22029| Best HMM Match : Copine (HMM E-Value=3.6e-24) 29 4.9
SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_34860| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_11954| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 150 bits (364), Expect = 9e-37
Identities = 67/85 (78%), Positives = 77/85 (90%)
Frame = +1
Query: 256 ETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAG 435
ETGVLKPGT+V F+P+NITTEVKSVEMHHE+L EA+PGDNVGFNVKNVSVK+++RG VAG
Sbjct: 127 ETGVLKPGTVVTFSPSNITTEVKSVEMHHESLAEALPGDNVGFNVKNVSVKDIKRGNVAG 186
Query: 436 DSKNNPPKGAADFTAQVIVLNHPGQ 510
D KNNPPK FTAQVIV+NHPG+
Sbjct: 187 DFKNNPPKPCKSFTAQVIVMNHPGE 211
Score = 104 bits (250), Expect = 6e-23
Identities = 44/65 (67%), Positives = 55/65 (84%)
Frame = +3
Query: 510 ISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCV 689
I GY+PVLDCHTAHIACKF ++ EK+DRR+GK E NPK IK+GDAA+V ++PSKP+CV
Sbjct: 212 IHAGYSPVLDCHTAHIACKFDKLLEKIDRRSGKKLEDNPKMIKTGDAAMVEMIPSKPMCV 271
Query: 690 ESFQE 704
E+F E
Sbjct: 272 ETFTE 276
Score = 99.5 bits (237), Expect = 2e-21
Identities = 47/75 (62%), Positives = 56/75 (74%), Gaps = 6/75 (8%)
Frame = +2
Query: 53 NMLEPSTKMPWFKGWQVER------KEGKADGKCLIEALDAILPPARPTDKPLRLPLQDV 214
NM+ +++MPWFK W +ER KE A G L E LD+ILPP+RP+ PLRLPLQDV
Sbjct: 53 NMITGTSQMPWFKQWTIERVDPATKKEANASGVTLFEGLDSILPPSRPSGLPLRLPLQDV 112
Query: 215 YKIGGIGTVPVGRVK 259
YKIGGIGTVPVGRV+
Sbjct: 113 YKIGGIGTVPVGRVE 127
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 34.3 bits (75), Expect = 0.098
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3
Query: 588 VDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQE 704
+D++TGK + P+ IK AI L +C+E F +
Sbjct: 496 IDKKTGKKGQTRPRFIKQDQIAIARLETQGVICIEKFSD 534
>SB_25386| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 695
Score = 31.1 bits (67), Expect = 0.91
Identities = 16/43 (37%), Positives = 28/43 (65%)
Frame = +3
Query: 552 HIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKP 680
HIA K E+K D ++ K+ ++ PK++ SGD ++VP++P
Sbjct: 74 HIAKKL-EVK---DSQSSKNNDLYPKTVPSGDIGTDSVVPNQP 112
>SB_33922| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 312
Score = 29.9 bits (64), Expect = 2.1
Identities = 20/60 (33%), Positives = 28/60 (46%)
Frame = -1
Query: 413 NSLTDTFFTLKPTLSPGTASWRASWCISTDLTSVVMLAGAKTTMVPGFNTPVSLCRRARY 234
N T T T PT++P + S IS SV+++AG +V TP +RA Y
Sbjct: 2 NLTTVTPSTTTPTVTPSDRQYFLSKVISYAAVSVLIIAGNLLCLVVFLRTPQMRRKRAYY 61
>SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3367
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Frame = -2
Query: 640 DLMDF--GLTSVDLPVRRSTFSL-ISANLQAMWAVWQS 536
DL +F G+T++ LP ST + NLQ W +WQS
Sbjct: 2456 DLGNFIKGITTIPLPSSSSTPIIDFEVNLQGEWILWQS 2493
>SB_733| Best HMM Match : DUF789 (HMM E-Value=1.3)
Length = 356
Score = 29.1 bits (62), Expect = 3.7
Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 6/74 (8%)
Frame = -2
Query: 280 YLVSTHQFHSADGHGTNT------TDFVYVLQGKTQGLVSGAGRWQDGIESFNEAFSVSF 119
Y STH+F G+ +T TD V Q GLV G + + S + S+
Sbjct: 248 YQKSTHRFDFTQGYAISTSNETKNTDNVKPFQWVVPGLVVGGEKRKSEKASLFVSLKQSY 307
Query: 118 AFFTLHLPSLEPRH 77
FFT P L H
Sbjct: 308 PFFTGKKPELYKLH 321
>SB_50149| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 656
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = +3
Query: 507 AISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLV-PSKP 680
A +N P+L+ T +A K D T + +VN KS G +I+ P+ P
Sbjct: 584 ASANALNPLLEHRTEKVALSKPMSNGKEDLNTETTADVNKKSCADGSDSIIGTTDPNSP 642
>SB_22029| Best HMM Match : Copine (HMM E-Value=3.6e-24)
Length = 726
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +3
Query: 573 EIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQ 701
EI R TG++TE+N ++ SG+ I +V + C+ Q
Sbjct: 257 EINASHSRETGQTTEIN--ALHSGEPGIPGVVAAYQACIRQVQ 297
>SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 476
Score = 28.3 bits (60), Expect = 6.4
Identities = 8/25 (32%), Positives = 14/25 (56%)
Frame = +2
Query: 41 WHGDNMLEPSTKMPWFKGWQVERKE 115
+H DN + PWF+ W +++E
Sbjct: 191 YHNDNKTHSTQTGPWFRAWSNQKRE 215
>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4529
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -3
Query: 573 LQICRQCGQCGNPILVCNRLRLPRMVKHNDLSCKICS 463
L +C QCGQC +P C +++ +M+ C C+
Sbjct: 767 LIVCSQCGQCFHP--YCVGVKVNKMILSKGWRCLDCT 801
>SB_34860| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 114
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +1
Query: 301 ANITTEVKSVEMHHEALQ-EAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPP 456
A+ TT A+Q E PG ++G + + VKEL++ AG + PP
Sbjct: 49 ASATTSTTGSHQAMSAMQSEEEPGASMGHRTERLKVKELKQMKRAGLTPLRPP 101
>SB_11954| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 145
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +1
Query: 286 VVFAPANITTEVKSVEMHHE-ALQEAVPGDNVGFNVKNVSVKELRRGYV 429
VVF P NI+ + ++ A ++ +P + +KN + R GYV
Sbjct: 14 VVFDPENISVDEGMIKFKGRLAFRQYMPAKPTKYGIKNWMAADARNGYV 62
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,174,240
Number of Sequences: 59808
Number of extensions: 629153
Number of successful extensions: 2006
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2003
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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