Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00910
         (704 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...   175   3e-46
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...   175   3e-46
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...   167   9e-44
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...   130   1e-32
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...   128   4e-32
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   2.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.8  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    22   6.5  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   8.6  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    21   8.6  

>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score =  175 bits (426), Expect = 3e-46
 Identities = 78/86 (90%), Positives = 81/86 (94%)
 Frame = +2

Query: 2   YNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPT 181
           YNPAAVAFVPISGWHGDNMLE S+KMPWFKGW VERKEGK +GKCLIEALDAILPP RPT
Sbjct: 126 YNPAAVAFVPISGWHGDNMLEVSSKMPWFKGWTVERKEGKVEGKCLIEALDAILPPTRPT 185

Query: 182 DKPLRLPLQDVYKIGGIGTVPVGRVK 259
           DK LRLPLQDVYKIGGIGTVPVGRV+
Sbjct: 186 DKALRLPLQDVYKIGGIGTVPVGRVE 211



 Score =  127 bits (306), Expect = 1e-31
 Identities = 59/64 (92%), Positives = 61/64 (95%)
 Frame = +1

Query: 256 ETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAG 435
           ETGVLKPG +V FAPA +TTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAG
Sbjct: 211 ETGVLKPGMVVTFAPAGLTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAG 270

Query: 436 DSKN 447
           DSKN
Sbjct: 271 DSKN 274


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score =  175 bits (426), Expect = 3e-46
 Identities = 78/86 (90%), Positives = 81/86 (94%)
 Frame = +2

Query: 2   YNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPT 181
           YNPAAVAFVPISGWHGDNMLE S+KMPWFKGW VERKEGK +GKCLIEALDAILPP RPT
Sbjct: 183 YNPAAVAFVPISGWHGDNMLEVSSKMPWFKGWTVERKEGKVEGKCLIEALDAILPPTRPT 242

Query: 182 DKPLRLPLQDVYKIGGIGTVPVGRVK 259
           DK LRLPLQDVYKIGGIGTVPVGRV+
Sbjct: 243 DKALRLPLQDVYKIGGIGTVPVGRVE 268



 Score =  172 bits (419), Expect = 2e-45
 Identities = 80/85 (94%), Positives = 82/85 (96%)
 Frame = +1

Query: 256 ETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAG 435
           ETGVLKPG +V FAPA +TTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAG
Sbjct: 268 ETGVLKPGMVVTFAPAGLTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAG 327

Query: 436 DSKNNPPKGAADFTAQVIVLNHPGQ 510
           DSKNNPPKGAADFTAQVIVLNHPGQ
Sbjct: 328 DSKNNPPKGAADFTAQVIVLNHPGQ 352



 Score =  124 bits (300), Expect = 6e-31
 Identities = 56/65 (86%), Positives = 60/65 (92%)
 Frame = +3

Query: 510 ISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCV 689
           ISNGYTPVLDCHTAHIACKFA+IKEK DRR GK+TE NPKSIKSGDAAIV LVPSKP+C 
Sbjct: 353 ISNGYTPVLDCHTAHIACKFADIKEKCDRRNGKTTEENPKSIKSGDAAIVMLVPSKPMCA 412

Query: 690 ESFQE 704
           E+FQE
Sbjct: 413 EAFQE 417


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score =  167 bits (406), Expect = 9e-44
 Identities = 74/86 (86%), Positives = 80/86 (93%)
 Frame = +2

Query: 2   YNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPT 181
           YN A+VAFVPISGWHGDNMLEPS K PW+KGW+VERK+G ADGK LIEALDAILPP+RPT
Sbjct: 183 YNTASVAFVPISGWHGDNMLEPSPKTPWYKGWKVERKDGNADGKTLIEALDAILPPSRPT 242

Query: 182 DKPLRLPLQDVYKIGGIGTVPVGRVK 259
           DK LRLPLQDVYKIGGIGTVPVGRV+
Sbjct: 243 DKALRLPLQDVYKIGGIGTVPVGRVE 268



 Score =  163 bits (396), Expect = 1e-42
 Identities = 74/85 (87%), Positives = 80/85 (94%)
 Frame = +1

Query: 256 ETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAG 435
           ETG+LKPG +V FAPA +TTEVKSVEMHHEAL EA+PGDNVGFNVKN+SVKELRRGYVAG
Sbjct: 268 ETGILKPGMLVTFAPAALTTEVKSVEMHHEALTEALPGDNVGFNVKNISVKELRRGYVAG 327

Query: 436 DSKNNPPKGAADFTAQVIVLNHPGQ 510
           DSKN PP+GAADFTAQVIVLNHPGQ
Sbjct: 328 DSKNQPPRGAADFTAQVIVLNHPGQ 352



 Score =  126 bits (303), Expect = 3e-31
 Identities = 57/65 (87%), Positives = 61/65 (93%)
 Frame = +3

Query: 510 ISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCV 689
           ISNGYTPVLDCHTAHIACKFAEIKEK DRRTGK+TE NPKSIKSGDAAIV L P+KP+CV
Sbjct: 353 ISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKSIKSGDAAIVMLQPTKPMCV 412

Query: 690 ESFQE 704
           E+FQE
Sbjct: 413 EAFQE 417



 Score = 21.8 bits (44), Expect = 6.5
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -1

Query: 374 LSPGTASWRASWCISTDLTSVVMLAGAKTTMVPGFN 267
           L PG     A   ++T++ SV M   A T  +PG N
Sbjct: 272 LKPGMLVTFAPAALTTEVKSVEMHHEALTEALPGDN 307


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score =  130 bits (314), Expect = 1e-32
 Identities = 56/62 (90%), Positives = 58/62 (93%)
 Frame = +2

Query: 2   YNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPT 181
           YNPAAVAFVPISGWHGDNMLE S+KMPWFKGW VERKEGK +GKCLIEALDAILPP RPT
Sbjct: 110 YNPAAVAFVPISGWHGDNMLEVSSKMPWFKGWTVERKEGKVEGKCLIEALDAILPPTRPT 169

Query: 182 DK 187
           DK
Sbjct: 170 DK 171


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score =  128 bits (310), Expect = 4e-32
 Identities = 58/63 (92%), Positives = 61/63 (96%)
 Frame = +1

Query: 322 KSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNH 501
           KSVEMHHEAL EA+PGDNVGFNVKN+SVKELRRGYVAGDSKN PP+GAADFTAQVIVLNH
Sbjct: 1   KSVEMHHEALTEALPGDNVGFNVKNISVKELRRGYVAGDSKNQPPRGAADFTAQVIVLNH 60

Query: 502 PGQ 510
           PGQ
Sbjct: 61  PGQ 63



 Score =  108 bits (259), Expect = 6e-26
 Identities = 50/56 (89%), Positives = 52/56 (92%)
 Frame = +3

Query: 510 ISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSK 677
           ISNGYTPVLDCHTAHIACKFAEIKEK DRRTGK+TE NPKSIKSGDAAIV L P+K
Sbjct: 64  ISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKSIKSGDAAIVMLQPTK 119


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 214 IQNRWYWYRARRQSETGVLKPGTIV 288
           ++NR    RA R+   G +KPG+I+
Sbjct: 370 LRNRARKARANRKPNLGDIKPGSII 394


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 400 SVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPG 507
           S ++LR  ++A +   + PKG      Q++VLN  G
Sbjct: 283 STRDLREIHLAYNGLRDLPKGIFTRLEQLLVLNLAG 318


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +2

Query: 518 RLHTSIGLPHCPHC 559
           RLHT     HC HC
Sbjct: 30  RLHTGEKPYHCSHC 43


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -2

Query: 76  FG*RLQHVVSVPSRNGHESDSSWV 5
           FG  L H++ V  +N   + + WV
Sbjct: 35  FGLSLHHIIDVDEKNQILTTNCWV 58


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -3

Query: 321 DFSSDVGGGKDNNGTWFQHTSFTLPTGTVPIPPI 220
           +FS+ +     N+G  F+  S   P    P+PP+
Sbjct: 14  EFSATLDTVVPNSGELFKAGSAEQPKEQEPLPPV 47


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,581
Number of Sequences: 438
Number of extensions: 5231
Number of successful extensions: 23
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)