Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00909
         (718 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8IDT2 Cluster: Putative uncharacterized protein PF13_0...    37   0.43 
UniRef50_A1STD2 Cluster: ATP synthase F0, H+-transporting two-se...    35   2.3  
UniRef50_A7E8R9 Cluster: Predicted protein; n=1; Sclerotinia scl...    33   5.3  
UniRef50_Q6NSP2 Cluster: Rho/rac guanine nucleotide exchange fac...    33   9.3  

>UniRef50_Q8IDT2 Cluster: Putative uncharacterized protein
           PF13_0220; n=1; Plasmodium falciparum 3D7|Rep: Putative
           uncharacterized protein PF13_0220 - Plasmodium
           falciparum (isolate 3D7)
          Length = 385

 Score = 37.1 bits (82), Expect = 0.43
 Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
 Frame = -3

Query: 500 FKKICDQLGYNLNCI*IILLSASRQLSFRAFRNTRLNVHTVDPPAYTHRITRKEQASSR- 324
           ++KI  +  Y  N     L S S Q  F   +N   N+   D     H   +K+Q S+  
Sbjct: 7   YQKIAGRKNYKKNA----LDSVSSQGIFDNIKNNIYNIDKTDYKILNHYNYKKDQTSTNL 62

Query: 323 SGNEPKPHYDIYRNNVSARSDTISSNRDSGQLPLCKN*NY 204
           S N+ K H+ I  NN++  ++ I++N ++    +C N  Y
Sbjct: 63  SKNKQKDHFFIRSNNIN--NNNINNNNNNKGKDMCVNPPY 100


>UniRef50_A1STD2 Cluster: ATP synthase F0, H+-transporting
           two-sector ATPase A subunit; n=4; Alteromonadales|Rep:
           ATP synthase F0, H+-transporting two-sector ATPase A
           subunit - Psychromonas ingrahamii (strain 37)
          Length = 299

 Score = 34.7 bits (76), Expect = 2.3
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = +3

Query: 438 GEKNDSYAIQIISQLITNLFELSLIQAALFWQFLLTLPEFNKSRKLLIRFSP 593
           GE   SY++++I  L   L  L LI+A  +      LP+F+K  ++L R  P
Sbjct: 77  GELAGSYSVELIGMLTYGLIGLLLIKAGRYIHDKFALPDFDKQEQILQRNIP 128


>UniRef50_A7E8R9 Cluster: Predicted protein; n=1; Sclerotinia
           sclerotiorum 1980|Rep: Predicted protein - Sclerotinia
           sclerotiorum 1980
          Length = 103

 Score = 33.5 bits (73), Expect = 5.3
 Identities = 21/66 (31%), Positives = 33/66 (50%)
 Frame = -3

Query: 425 LSFRAFRNTRLNVHTVDPPAYTHRITRKEQASSRSGNEPKPHYDIYRNNVSARSDTISSN 246
           L+  A     L +H   PPA TH   + E+  +   N PK H+  +R+N +AR +  S N
Sbjct: 27  LAISAEVGAHLKLHG-SPPA-THSNPKNEEERNVQSN-PKKHHTAHRHNNAARDEVRSEN 83

Query: 245 RDSGQL 228
            +  +L
Sbjct: 84  EEDDEL 89


>UniRef50_Q6NSP2 Cluster: Rho/rac guanine nucleotide exchange factor
            (GEF) 18; n=2; Danio rerio|Rep: Rho/rac guanine
            nucleotide exchange factor (GEF) 18 - Danio rerio
            (Zebrafish) (Brachydanio rerio)
          Length = 940

 Score = 32.7 bits (71), Expect = 9.3
 Identities = 18/66 (27%), Positives = 31/66 (46%)
 Frame = -3

Query: 422  SFRAFRNTRLNVHTVDPPAYTHRITRKEQASSRSGNEPKPHYDIYRNNVSARSDTISSNR 243
            S +A R++  + H + P  +TH        SS SGN  + H   + ++ S+   T S +R
Sbjct: 869  SLKAIRSS--SPHHLHPDLFTHPDKLSSSVSSHSGNSSRKHNHSHNSHTSSTHSTHSGHR 926

Query: 242  DSGQLP 225
             +   P
Sbjct: 927  KTKDSP 932


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 620,654,436
Number of Sequences: 1657284
Number of extensions: 11828044
Number of successful extensions: 23543
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 22894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23535
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 57851245060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)