Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00909
         (718 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14C8.15 |||triglyceride lipase-cholesterol esterase |Schizos...    29   0.88 
SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo...    28   1.5  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    26   4.7  
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos...    26   4.7  
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy...    25   8.2  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    25   8.2  
SPBC21B10.08c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    25   8.2  

>SPBC14C8.15 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 460

 Score = 28.7 bits (61), Expect = 0.88
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +3

Query: 474 SQLITNLF-ELSLIQAALFWQFLLTLPEFNKSRKLLIRF 587
           SQL+  +F   S++ +A+FWQ +L  P F K   L +RF
Sbjct: 262 SQLLYLMFGRNSMLGSAVFWQAVLYPPVFAKIVDLFLRF 300


>SPAC637.12c |mst1||histone acetyltransferase
           Mst1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 314 HSLTYY*LVPCALFCGCRREGRPCEHLV 397
           H + YY + P   +C CRR+   C HLV
Sbjct: 278 HKMLYYDVDPFLFYCMCRRDEYGC-HLV 304


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 14/56 (25%), Positives = 24/56 (42%)
 Frame = -3

Query: 422 SFRAFRNTRLNVHTVDPPAYTHRITRKEQASSRSGNEPKPHYDIYRNNVSARSDTI 255
           SF  F N + +  T+  P+     +R +  +S  G  PK + D      + R+  I
Sbjct: 607 SFGIFNNDKKSNRTISTPSPRESFSRLQMVASSLGFRPKDNKDKESGGYNKRNSKI 662


>SPBC947.01 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/56 (23%), Positives = 26/56 (46%)
 Frame = -3

Query: 413 AFRNTRLNVHTVDPPAYTHRITRKEQASSRSGNEPKPHYDIYRNNVSARSDTISSN 246
           A  +T L+ H   PP +   +     + S S  + + H   Y+  +++  DT+ S+
Sbjct: 256 ANNSTPLSFHAPIPPLHVPAVPLTSASHSSSDGKSRKHPSPYKPYLNSSHDTLGSS 311


>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 922

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -3

Query: 674 FLNVYGTKITVCTMILSFFFKL 609
           FLN+YG K+ V +M +S+  KL
Sbjct: 569 FLNLYGHKLPVLSMDISYDSKL 590


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1727

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -3

Query: 353 ITRKEQASSRSGNEPKPHYDIYRNNVSARSDTISS-NRD 240
           I  K ++   S  E + +Y++YRN ++A  +++S  N+D
Sbjct: 634 IDDKMKSIDESTRELEKNYEVYRNEMTAIQESLSKRNQD 672


>SPBC21B10.08c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 198

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -3

Query: 431 RQLSFRAFRNTRLNVHTVDPPAYTHRITRKEQASSRSGNEPKP 303
           +QL+     +T L +H++D P+    +TR     S+SG EP P
Sbjct: 136 QQLTVNPKADTSLIIHSLDDPSLYAVVTR----YSKSGIEPGP 174


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,659,329
Number of Sequences: 5004
Number of extensions: 53032
Number of successful extensions: 122
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)