Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00909
         (718 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1208 + 25306367-25306567,25306709-25306931,25307930-253081...    29   3.7  
09_06_0120 - 20973635-20974879                                         29   4.9  
03_02_0048 - 5265595-5265783,5265882-5265992,5266259-5266547,526...    29   4.9  
01_06_0430 + 29299970-29300031,29300162-29300294,29301057-293011...    29   4.9  

>08_02_1208 +
           25306367-25306567,25306709-25306931,25307930-25308175,
           25308636-25308686,25308804-25309064,25309159-25309211,
           25309292-25309661,25310068-25310882
          Length = 739

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -2

Query: 717 IIYFSLFHLNINSVVLKCLWN*NYSLYHDFVVFF 616
           +I+  LF  N+ +VV+  +W  N +L   F VFF
Sbjct: 472 VIFVMLFTTNLMTVVMLIIWESNIALASLFFVFF 505


>09_06_0120 - 20973635-20974879
          Length = 414

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = +3

Query: 462 IQIISQLITNLFELSLIQAALFWQFLLTLPEF 557
           +Q+IS L +NLFELS  +AA    +  +LP F
Sbjct: 75  LQLISALASNLFELSPSRAAWISAYRGSLPTF 106


>03_02_0048 -
           5265595-5265783,5265882-5265992,5266259-5266547,
           5266647-5266903,5266995-5267356,5267447-5267522,
           5267618-5267707,5267800-5267891,5267995-5268098,
           5268191-5268253,5268609-5268736
          Length = 586

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -3

Query: 353 ITRKEQASSRSGNEPKPH 300
           + +KE+  S+SG EPKPH
Sbjct: 240 LAKKEKDDSKSGKEPKPH 257


>01_06_0430 +
           29299970-29300031,29300162-29300294,29301057-29301160,
           29302201-29302372,29302488-29302628,29302707-29303055,
           29303133-29305477
          Length = 1101

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -3

Query: 449 ILLSASRQLSFRAFRNTRLNVHTVDPPAYTHRIT-RKEQA 333
           I   A+ QL+ R   +   N    + PAYTH  T RK+QA
Sbjct: 367 IAARAAAQLASRGNLSAEQNTGAFESPAYTHETTPRKQQA 406


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,219,409
Number of Sequences: 37544
Number of extensions: 310487
Number of successful extensions: 652
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)