Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00909
         (718 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29659| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.53 
SB_29730| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.53 
SB_11044| Best HMM Match : FMO-like (HMM E-Value=3.4)                  30   2.2  
SB_25640| Best HMM Match : Sec23_BS (HMM E-Value=5.1)                  29   2.8  
SB_23376| Best HMM Match : GPS (HMM E-Value=1.2)                       29   2.8  
SB_33125| Best HMM Match : Pkinase (HMM E-Value=0)                     28   6.6  
SB_8332| Best HMM Match : PDZ (HMM E-Value=1.3e-17)                    28   6.6  
SB_58267| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=1.5)            28   8.7  
SB_31728| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00016)         28   8.7  

>SB_29659| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 130

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = -3

Query: 416 RAFRNTRLNVHTVDPPAYTHRITRKEQASSRSGNEPKP-HYDIYRNNVSARSDTISSNRD 240
           R   NTRL  +T      TH    +E A+SR+ N     H++   +N   R  T S  R+
Sbjct: 63  RNVTNTRLR-NTQPHEHVTHNYVTREHATSRTRNLTNTRHHEHVTHNYGTREHTTSRTRE 121

Query: 239 SG 234
           SG
Sbjct: 122 SG 123


>SB_29730| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4275

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -3

Query: 371  PAYTHRITRKEQASSRSGNEPKPHYDIYRNNVSARSDTISSNRDSGQLPL 222
            P     +TR  Q  ++  N+ KP+ DI+  N+   SD +S N    + PL
Sbjct: 1655 PGIKMDVTRSRQKRNKLANQLKPYNDIFGCNLRPDSDHVSFNGTLFRFPL 1704


>SB_11044| Best HMM Match : FMO-like (HMM E-Value=3.4)
          Length = 781

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 19/73 (26%), Positives = 34/73 (46%)
 Frame = -3

Query: 449 ILLSASRQLSFRAFRNTRLNVHTVDPPAYTHRITRKEQASSRSGNEPKPHYDIYRNNVSA 270
           ILL     L    F + ++    ++ P  +       +A+ ++ +EP P Y  YR + SA
Sbjct: 603 ILLRVDVHLKACHFFSNQIVASQMEEPQGSTSAQHLAEAAEQTAHEPAPSYRRYRRHDSA 662

Query: 269 RSDTISSNRDSGQ 231
           R  T ++   SG+
Sbjct: 663 RKCTATTACRSGK 675


>SB_25640| Best HMM Match : Sec23_BS (HMM E-Value=5.1)
          Length = 291

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +3

Query: 438 GEKNDSYAIQIISQLITNLFELSLIQAALFWQFLLTLPEFNKSRKLLIR 584
           G    +  I  +S+L   +FE   IQ  +F+Q +    + + SRKLL R
Sbjct: 49  GSSKTNQWIYFVSKLYLEIFEFPEIQGVIFFQTVKNHLQHSGSRKLLSR 97


>SB_23376| Best HMM Match : GPS (HMM E-Value=1.2)
          Length = 368

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = -3

Query: 377 DPPAYTHRITRKEQASSRSGNEPKPHYDIYRNNV 276
           D P  TH I+++++A SR G +  P + ++RN V
Sbjct: 34  DKPWITHAISKRQRAFSR-GGKGSPAFHLWRNKV 66


>SB_33125| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 937

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -3

Query: 374 PPAYTHRITRKEQASSRSGNEPKPHYDIYRNNVSARSDTISSNR 243
           PP  TH+  R    S+ + N P P   +   N++ARS   S  R
Sbjct: 615 PPVATHQEDRYRPGSTPNSNIPVPSSRLGARNMAARSTFHSGER 658


>SB_8332| Best HMM Match : PDZ (HMM E-Value=1.3e-17)
          Length = 1038

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 7/85 (8%)
 Frame = +2

Query: 254  RWYLSVQKRYSYRYRNAVSVHSLTYY*LVPCAL---FCGCRREGRPC-EHLVWCSEMLEM 421
            R Y  V + Y++ YR    V ++       C      C C      C EH+  C+E + M
Sbjct: 807  RTYAHVYRTYAHVYRTYARVPNICTCVPNICTCVPNICTCTEHMHICTEHMHMCTEHMHM 866

Query: 422  ITDGSR--REE*FICNSN-YIPTDH 487
             TD      E   +C  + ++ TDH
Sbjct: 867  CTDHMHMCTEHMHMCTEHMHVCTDH 891


>SB_58267| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=1.5)
          Length = 722

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -3

Query: 374 PPAYTHRITRKEQASSRSGNEPKPHYDIYRNNVSARSDTISSNRDSG 234
           PP  T R + K    SRS  + +PH ++   + S  S  + SN D G
Sbjct: 386 PPQETIRDSSKSSLVSRSEGQMRPHKNL-EISASLSSSMVLSNDDDG 431


>SB_31728| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00016)
          Length = 277

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
 Frame = -1

Query: 592 GEKRMSNFRLLLNSGSVNRNC---QKSAACISESSKRFVISW 476
           G+KR+++ +LLL SG    +    Q  A  +S+S++R +I W
Sbjct: 67  GQKRLTSGKLLLYSGHEQEDAAHTQGVALMLSKSAQRALIGW 108


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,286,920
Number of Sequences: 59808
Number of extensions: 373917
Number of successful extensions: 762
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)