Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00909
         (718 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g18350.1 68415.m02138 zinc finger homeobox family protein / Z...    30   1.3  
At5g45090.1 68418.m05531 lectin-related low similarity to PP2 le...    29   2.3  
At5g27110.1 68418.m03236 pentatricopeptide (PPR) repeat-containi...    28   7.1  
At4g34430.3 68417.m04892 DNA-binding family protein contains Pfa...    28   7.1  
At3g28880.1 68416.m03605 ankyrin repeat family protein contains ...    28   7.1  
At4g34430.4 68417.m04893 DNA-binding family protein contains Pfa...    27   9.4  
At4g34430.2 68417.m04891 DNA-binding family protein contains Pfa...    27   9.4  
At4g34430.1 68417.m04890 DNA-binding family protein contains Pfa...    27   9.4  

>At2g18350.1 68415.m02138 zinc finger homeobox family protein /
           ZF-HD homeobox family protein
          Length = 262

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 11/45 (24%), Positives = 26/45 (57%)
 Frame = -3

Query: 407 RNTRLNVHTVDPPAYTHRITRKEQASSRSGNEPKPHYDIYRNNVS 273
           +++ L+ H + P  Y+    +++  + R+G++P P  D+  N +S
Sbjct: 17  KSSALDHHRLPPYTYSQTANKEKPTTKRNGSDPDPDPDLDTNPIS 61


>At5g45090.1 68418.m05531 lectin-related low similarity to PP2
           lectin polypeptide [Cucurbita maxima] GI:410437;
           contains Pfam profile PF01582: TIR domain
          Length = 332

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 16/32 (50%), Positives = 18/32 (56%)
 Frame = +1

Query: 517 LHSFGNFY*HYRNLTKVESYSFVFLPAIRDLS 612
           LH  GNF  H RNLT    Y  VFL ++ D S
Sbjct: 220 LHMSGNF--HTRNLTPGTKYEVVFLVSLDDTS 249


>At5g27110.1 68418.m03236 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 691

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
 Frame = -1

Query: 598 SRGEKRMSNFRLLLNSG-SVNRNC--QKSAACISES-SKRFVISWDII*IAYESFFSPRA 431
           S  E R+    LLL++   +   C  +K A  I  S  K+ V+SW ++  AY S   PR 
Sbjct: 435 SISESRLETDELLLSALLDMYSKCGNEKEAFRIFNSIPKKDVVSWTVMISAYGSHGQPRE 494

Query: 430 VSYHFE 413
             Y F+
Sbjct: 495 ALYQFD 500


>At4g34430.3 68417.m04892 DNA-binding family protein contains Pfam
           domains PF04433: SWIRM domain, PF00249: Myb-like
           DNA-binding domain and PF00569: Zinc finger, ZZ type
          Length = 983

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = -3

Query: 377 DPPAYTHRITRKEQASSRSGNEPKPHYDIYRNNVSARSDTISSNRDSGQLP 225
           DPP      T+ + A +  GN+   H D      S +++ +S N D  ++P
Sbjct: 592 DPPDNKKDPTKSKSADAE-GNDDNSHKDDQPEEKSKKAEEVSLNSDDREMP 641


>At3g28880.1 68416.m03605 ankyrin repeat family protein contains
           ankyrin repeats, Pfam:PF00023
          Length = 762

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 380 PCEHLVWCSEMLEMITDGSRREE 448
           PC H +WCS   + IT  +  E+
Sbjct: 686 PCRHKLWCSSCKQQITQSTSGEK 708


>At4g34430.4 68417.m04893 DNA-binding family protein contains Pfam
           domains PF04433: SWIRM domain, PF00249: Myb-like
           DNA-binding domain and PF00569: Zinc finger, ZZ type
          Length = 986

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = -3

Query: 377 DPPAYTHRITRKEQASSRS-GNEPKPHYDIYRNNVSARSDTISSNRDSGQLP 225
           DPP      T+ +  S+ + GN+   H D      S +++ +S N D  ++P
Sbjct: 592 DPPDNKKDPTKSKSCSADAEGNDDNSHKDDQPEEKSKKAEEVSLNSDDREMP 643


>At4g34430.2 68417.m04891 DNA-binding family protein contains Pfam
           domains PF04433: SWIRM domain, PF00249: Myb-like
           DNA-binding domain and PF00569: Zinc finger, ZZ type
          Length = 985

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = -3

Query: 377 DPPAYTHRITRKEQASSRS-GNEPKPHYDIYRNNVSARSDTISSNRDSGQLP 225
           DPP      T+ +  S+ + GN+   H D      S +++ +S N D  ++P
Sbjct: 592 DPPDNKKDPTKSKSCSADAEGNDDNSHKDDQPEEKSKKAEEVSLNSDDREMP 643


>At4g34430.1 68417.m04890 DNA-binding family protein contains Pfam
           domains PF04433: SWIRM domain, PF00249: Myb-like
           DNA-binding domain and PF00569: Zinc finger, ZZ type
          Length = 985

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = -3

Query: 377 DPPAYTHRITRKEQASSRS-GNEPKPHYDIYRNNVSARSDTISSNRDSGQLP 225
           DPP      T+ +  S+ + GN+   H D      S +++ +S N D  ++P
Sbjct: 592 DPPDNKKDPTKSKSCSADAEGNDDNSHKDDQPEEKSKKAEEVSLNSDDREMP 643


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,433,661
Number of Sequences: 28952
Number of extensions: 261125
Number of successful extensions: 563
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)