Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00908
         (659 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    23   2.9  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    23   2.9  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    23   2.9  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    22   3.9  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    22   3.9  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    22   5.1  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   9.0  

>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 186 DGLISIICQSVSADTLTC 239
           DG I  +C S+  DTL C
Sbjct: 218 DGSIVFVCFSLVEDTLPC 235


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 70  VSPFFSSTSAEPPPSKSP 17
           +SP   +  A PPP++SP
Sbjct: 106 LSPQIQTQVARPPPARSP 123


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 70  VSPFFSSTSAEPPPSKSP 17
           +SP   +  A PPP++SP
Sbjct: 106 LSPQIQTQVARPPPARSP 123


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +1

Query: 595 ARCNRVGKPVICATQMLESM 654
           ARCN +    IC +Q+  ++
Sbjct: 458 ARCNEIRPDAICVSQLKNAL 477


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +3

Query: 318 PRRTSRTCSSASN 356
           P+RT+ T SSASN
Sbjct: 203 PQRTASTASSASN 215


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 416 RGILGEKGKNIKIISKIENH 475
           RG+L +  +N   +SKI+ H
Sbjct: 218 RGLLLDTARNFLTVSKIKKH 237


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -3

Query: 432  SPRMPRISCSAAPLRMNDAKIISTPCSTPKS 340
            SPR P  + + +P R + +   S    TP+S
Sbjct: 918  SPRQPAETHAGSPCRNSASPASSDRSGTPRS 948


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,641
Number of Sequences: 336
Number of extensions: 3261
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17073220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)