Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00908
         (659 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1769| Best HMM Match : PK (HMM E-Value=7.9e-19)                    105   3e-23
SB_1468| Best HMM Match : PK (HMM E-Value=2.2e-19)                     73   2e-13
SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.48 
SB_3182| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.83 
SB_45619| Best HMM Match : M (HMM E-Value=0.01)                        30   1.5  
SB_18916| Best HMM Match : GPS (HMM E-Value=1e-17)                     30   1.9  
SB_18634| Best HMM Match : CENP-B_N (HMM E-Value=1.6)                  30   1.9  
SB_42365| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_56456| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_45185| Best HMM Match : zf-CCHC (HMM E-Value=7.2)                   28   5.9  
SB_45575| Best HMM Match : Keratin_B2 (HMM E-Value=8.8)                28   5.9  
SB_38048| Best HMM Match : CUB (HMM E-Value=1.4e-31)                   28   5.9  
SB_16363| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_20716| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_45210| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  

>SB_1769| Best HMM Match : PK (HMM E-Value=7.9e-19)
          Length = 145

 Score =  105 bits (252), Expect = 3e-23
 Identities = 50/84 (59%), Positives = 64/84 (76%)
 Frame = +2

Query: 254 SMLGSRKGVNLPGIPVDLPAVSEKDKSDLLFGVEQGVDMIFASFIRNGAALHEIRGILGE 433
           ++LGS+KGVNLP   VDLPAVSE+DK D+ F VE  VDMIFASFIR    + EIR +L +
Sbjct: 17  ALLGSKKGVNLPNCAVDLPAVSEQDKKDIAFAVEMEVDMIFASFIRKPEDIAEIRKLLEK 76

Query: 434 KGKNIKIISKIENHQGMVNLDEII 505
             KNIKI++KIENH+G+   +EI+
Sbjct: 77  HAKNIKIVAKIENHEGVRRFNEIL 100



 Score = 78.6 bits (185), Expect = 4e-15
 Identities = 37/43 (86%), Positives = 38/43 (88%)
 Frame = +1

Query: 511 SDGIMVARGDLGIEIPPEKVFLAQKTMIARCNRVGKPVICATQ 639
           +DGIMVARGDLGIEIP EKVFLAQK MIARCN  G PVICATQ
Sbjct: 103 ADGIMVARGDLGIEIPAEKVFLAQKMMIARCNMKGVPVICATQ 145


>SB_1468| Best HMM Match : PK (HMM E-Value=2.2e-19)
          Length = 211

 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 35/54 (64%), Positives = 41/54 (75%)
 Frame = +2

Query: 254 SMLGSRKGVNLPGIPVDLPAVSEKDKSDLLFGVEQGVDMIFASFIRNGAALHEI 415
           ++LGS+KGVNLP   VDLPAVSE+DK D+ F VE  VDMIFASFIR    + EI
Sbjct: 157 ALLGSKKGVNLPNCAVDLPAVSEQDKKDIAFAVEMEVDMIFASFIRKPEDIAEI 210



 Score = 61.7 bits (143), Expect = 5e-10
 Identities = 25/64 (39%), Positives = 42/64 (65%)
 Frame = +3

Query: 12  RTGLLEGGGSAEVELKKGETIKLTTSSDYQEKGNADTIYVDYKNITNVVKPGNRIFIDDG 191
           R     G    E++L+KG+ +K++T     ++GN + I+VDY+NI  VV+ G  +++DDG
Sbjct: 76  RLNFSHGTHEGEIKLEKGQKLKVSTDKAMYDQGNTECIFVDYENIVKVVQIGGTVYVDDG 135

Query: 192 LISI 203
           LIS+
Sbjct: 136 LISL 139


>SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5445

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 19/69 (27%), Positives = 36/69 (52%)
 Frame = +3

Query: 81   TTSSDYQEKGNADTIYVDYKNITNVVKPGNRIFIDDGLISIICQSVSADTLTCTIENGVC 260
            ++SS+ Q K  A  + +D+ NIT       ++     L + IC++V+  +++  +  G C
Sbjct: 1086 SSSSNAQMKEIASPLRMDHMNITARASQIGQLVTT--LKTAICRAVNPCSVSPCLNGGTC 1143

Query: 261  SDPGKASTC 287
            S  GK + C
Sbjct: 1144 STNGKLAVC 1152


>SB_3182| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1000

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 16/29 (55%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +2

Query: 290 GIPV-DLPAVSEKDKSDLLFGVEQGVDMI 373
           GIPV  LP   E+DK  LLFG E  VD++
Sbjct: 801 GIPVLTLPGKLERDKKFLLFGEEDAVDVL 829


>SB_45619| Best HMM Match : M (HMM E-Value=0.01)
          Length = 1315

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +1

Query: 241 PLKTEYARIPERRQPARHTRGPTRSLREGQV 333
           P +  YAR PE RQP+ ++R P  +LRE ++
Sbjct: 25  PRQPPYAREPEPRQPS-YSRDPDEALRESEL 54


>SB_18916| Best HMM Match : GPS (HMM E-Value=1e-17)
          Length = 1470

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 20/59 (33%), Positives = 30/59 (50%)
 Frame = -2

Query: 502  NLV*IDHSLVIFNLGDDLDVLPLFAEDAANLVQRGAVADE*RENHINALFDAEEQVRLV 326
            N + +D+ + IF  GD +  +PLF+  A  +  R  +  E RE  I +  D EE   LV
Sbjct: 1029 NGINVDNIVQIFLFGDTVQFVPLFSTVA--MPPRNRIPFEHRERIIRSFEDEEEDYLLV 1085


>SB_18634| Best HMM Match : CENP-B_N (HMM E-Value=1.6)
          Length = 154

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 20/59 (33%), Positives = 30/59 (50%)
 Frame = -2

Query: 502 NLV*IDHSLVIFNLGDDLDVLPLFAEDAANLVQRGAVADE*RENHINALFDAEEQVRLV 326
           N + +D+ + IF  GD +  +PLF+  A  +  R  +  E RE  I +  D EE   LV
Sbjct: 20  NGINVDNIVQIFLFGDTVQFVPLFSTVA--MPPRNRIPFEHRERIIRSFEDEEEDYLLV 76


>SB_42365| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 791

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = +3

Query: 297 PWTYPQSPRRTSRTCSSASNKALI*FSRHSSATAPRCTRFAASSAKRGRTSRSSPR 464
           PW    SP+R S   SS+S  +    S  SS+ +   +R  + +   G  SR+S R
Sbjct: 179 PWQRTTSPKRRSPRRSSSSYSSRSRSSSSSSSGSSHSSRSQSHTPSSGSGSRNSSR 234


>SB_56456| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1266

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -1

Query: 263 RAYSVFNGT-RKSVSADRLTDDRDEAIIDED 174
           +AYS  +G+ R S SAD   DD DE + DED
Sbjct: 183 KAYSTTDGSVRTSSSADSGDDDLDEILGDED 213


>SB_45185| Best HMM Match : zf-CCHC (HMM E-Value=7.2)
          Length = 147

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
 Frame = +3

Query: 129 VDYKNITNVVKPGNRIFIDDGLIS--IICQSVSADTLTCTIENGVC----SDPGKASTCP 290
           V  K I   ++    +F  D ++   I C   +A +L  +++   C    +DPGK S   
Sbjct: 71  VKKKQIVRKIRREKALFHADSVLMRHIACLKFTAKSLRSSLKTSSCGYTITDPGKTSLKN 130

Query: 291 AYPWT 305
            Y WT
Sbjct: 131 VYMWT 135


>SB_45575| Best HMM Match : Keratin_B2 (HMM E-Value=8.8)
          Length = 271

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +3

Query: 255 VCSDPGKASTCPAYPWTYPQSPRRTSRTCSSASNKAL 365
           VC++P  + T   YP T   SP RT +  S++ +KAL
Sbjct: 198 VCTNPPFSPTAAPYPVTIVLSPTRT-KNVSASRHKAL 233


>SB_38048| Best HMM Match : CUB (HMM E-Value=1.4e-31)
          Length = 551

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +3

Query: 195 ISIICQSVS-ADTLTCTIENGVCSDPGKASTCPAY 296
           I  + Q+VS  + +TC   NG     G+ +TCP+Y
Sbjct: 298 IEYVPQNVSFTNLITCPSFNGTAVPIGRGTTCPSY 332


>SB_16363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 709

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
 Frame = +3

Query: 135 YKNITNVVKPGNRIFIDDGLISIICQSVSADTLTCTIENGVCS----DPGKASTC 287
           Y+    V   G R+         IC   + +   CT +N +C+    +PGK  TC
Sbjct: 522 YQPDNTVCDKGRRVCSVGECAKSICTKYALEECQCTADNDLCTVCCKEPGKDDTC 576


>SB_20716| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 423

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 252 GVCSDPGKASTCPAYPWTYPQSP 320
           G C+    AS    +PW YPQ+P
Sbjct: 88  GPCNATRNASPSQYHPWAYPQAP 110


>SB_45210| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 675

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 35/125 (28%), Positives = 51/125 (40%), Gaps = 1/125 (0%)
 Frame = +3

Query: 276 ASTCPAYPWTYPQSPRRTSRTCSSASNKALI*FSRHSSATAPRCTRFAASSAKRGRT-SR 452
           AS CP        S  R  R+ S +S  +       S++++PR +R    SAKRG + S+
Sbjct: 64  ASPCPPISKKISTSCDRRDRSRSYSSPVS----PSRSNSSSPRMSR----SAKRGISKSK 115

Query: 453 SSPRLKITREWSI*TRL*LIRWYHGCSRRSGYRDPSRKGIPRPEDHDRQMQSGWKTSDLR 632
           S   L I + +          W H   +R      S    P P + D   QSG  ++  R
Sbjct: 116 SCQTLTIQKSFE--------PWKHSTVQRRASLSGSLARSPSPREEDLMSQSGCASNVKR 167

Query: 633 DSNAG 647
            S  G
Sbjct: 168 RSIGG 172


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,990,572
Number of Sequences: 59808
Number of extensions: 449417
Number of successful extensions: 1543
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1542
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)