Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00907
         (770 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP8A3.09c |paa1||protein phosphatase regulatory subunit Paa1|S...   115   9e-27
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    28   1.3  
SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|...    27   2.2  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    27   3.0  

>SPAP8A3.09c |paa1||protein phosphatase regulatory subunit
           Paa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score =  115 bits (276), Expect = 9e-27
 Identities = 58/83 (69%), Positives = 68/83 (81%)
 Frame = +2

Query: 245 KEVATIALALGVERTKSELIPFLTETIYDEDEVLLALAEQLGSFINLVGGGEFAHCLLPP 424
           + ++TIALALG ERT+ ELIPFL E+I DEDEVL ALA+QLG+F++ VGG E+AH LL P
Sbjct: 33  ERLSTIALALGPERTRDELIPFLDESIDDEDEVLSALADQLGNFVDYVGGPEYAHVLLSP 92

Query: 425 LETLAAVEETVVRDKAVASLRAV 493
           LE LAA EETVVRDKAV SL  V
Sbjct: 93  LENLAATEETVVRDKAVDSLNKV 115



 Score = 81.0 bits (191), Expect = 2e-16
 Identities = 40/93 (43%), Positives = 53/93 (56%), Gaps = 1/93 (1%)
 Frame = +1

Query: 493 CRAPQPQALEEHFVPLVQRLAGGDWFTSRTSACGLFSVCYPRVSAP-VKAELRQHFRSLC 669
           C     + LE++FVPLVQRL+  +WFTSR S+ GL+   Y +   P VK  LRQ F  LC
Sbjct: 116 CICLSQEQLEQYFVPLVQRLSTAEWFTSRASSAGLYCAAYSQSENPAVKVSLRQSFSHLC 175

Query: 670 QDDTPMVRRAAAYKLGEFAKVVEIEYVKSDLFP 768
            D+ PMVRR AA    +F  +V  +    +  P
Sbjct: 176 HDEAPMVRRPAATNCAKFVFLVTKQEAIDEFIP 208



 Score = 39.9 bits (89), Expect = 4e-04
 Identities = 16/26 (61%), Positives = 24/26 (92%)
 Frame = +3

Query: 177 LYPIAVLIDELKNEDVQLRLNSIKKL 254
           LYPIAVLIDELK++++  RLN++++L
Sbjct: 10  LYPIAVLIDELKHDEITYRLNALERL 35



 Score = 35.5 bits (78), Expect = 0.008
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
 Frame = +2

Query: 251 VATIALALGVERTKSELIPFLTETIYDED-EVLLALAEQLGSFINLVGGGEFAHCLLPPL 427
           +  +A  LG E+T   L+P   E + DE+ EV L +  +L     +VG    +  LLP +
Sbjct: 347 IGALAPQLGKEKTTEYLLPMFLELLKDENPEVRLNIISKLEVVNKVVGIELLSQSLLPAI 406

Query: 428 ETLAAVEETVVR 463
            TLA  ++  VR
Sbjct: 407 VTLAEDKQWRVR 418


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 276 PRANAIVATSL*SSNEAVHPHSSAHL 199
           P+AN +  T L SS+   H H+S HL
Sbjct: 104 PKANKVEVTDLPSSSSVEHLHTSKHL 129


>SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 684

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 459 SEIRQWLHSVPLPSTTAASTRGTL 530
           +E+R WLH V +P ++  STR  L
Sbjct: 193 NELRTWLHDVGVPISSHESTRSHL 216


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +2

Query: 242 YKEVATIALALGVERTKSELIPFLTETIYDEDEVL 346
           Y+E+  + L   +E+ K E++PFL    Y  +EVL
Sbjct: 469 YQEI--LVLKSSIEKEKVEIVPFLDIRKYSPNEVL 501


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,941,380
Number of Sequences: 5004
Number of extensions: 56172
Number of successful extensions: 189
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)